1. Home
  2. Species
  3. Vibrio cholerae
  4. Sequence
  5. KNA56281

KNA56281 (VCV51_030599)


Aliases : VCV51_030599

Description : 1-deoxy-D-xylulose-5-phosphate synthase [Ensembl]. Transketolase, 1-deoxy-D-xylulose-5-phosphate synthase [Interproscan].


Gene families : OG_02_0000319 (OrthoFinder) Phylogenetic Tree(s): OG0000319_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA56281
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC73523 dxs, b0420 1-deoxyxylulose-5-phosphate synthase, thiamine... 0.02 OrthoFinder
AAL19376 STM0422, dxs 1-deoxyxylulose-5-phosphate synthase; flavoprotein... 0.1 OrthoFinder
AGT25664 N559_4036 1-deoxy-D-xylulose-5-phosphate synthase [Ensembl].... 0.11 OrthoFinder
AKI49361 dxs, L2625_01459 1-deoxy-D-xylulose-5-phosphate synthase [Ensembl].... 0.03 OrthoFinder
AKP15354 dxs, WX61_01306 1-deoxy-D-xylulose-5-phosphate synthase [Ensembl].... 0.05 OrthoFinder
CCL17359 dxs, BN171_1450020 1-deoxy-D-xylulose-5-phosphate synthase [Ensembl].... 0.04 OrthoFinder
CCL18717 tkt, BN171_2590005 Transketolase, central and C-terminal... 0.04 OrthoFinder
CCP45480 dxs1, Rv2682c Probable 1-deoxy-D-xylulose 5-phosphate synthase Dxs1... 0.03 OrthoFinder
CRP52225 dxs 1-deoxy-D-xylulose-5-phosphate synthase [Ensembl].... 0.07 OrthoFinder
EDJ91088 CGSHi22421_10117 1-deoxy-D-xylulose-5-phosphate synthase [Ensembl].... 0.06 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0016114 terpenoid biosynthetic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0009271 phage shock IEP Enrichment
CC GO:0009360 DNA polymerase III complex IEP Enrichment
MF GO:0009378 four-way junction helicase activity IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009615 response to virus IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0098586 cellular response to virus IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR005475 Transketolase-like_Pyr-bd 318 479
IPR033248 Transketolase_C 506 616
IPR005477 Dxylulose-5-P_synthase 14 282
No external refs found!