KNA56287 (VCV51_030605)

Aliases : VCV51_030605

Description : LysR substrate binding domain-containing protein [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000139 (OrthoFinder) Phylogenetic Tree(s): OG0000139_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA56287
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
AAC75850	gcvA, b2808	glycine cleavage system transcriptional activator;...	0.03	OrthoFinder
AAL21860	STM2982, gcvA	regulator of gcv operon [Ensembl]. LysR substrate...	0.05	OrthoFinder
AAL22660	STM3800, dsdC	LysR family transcriptional activator [Ensembl]. LysR...	0.02	OrthoFinder
AGT23984	N559_2281	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT25159	N559_3511, LysR	transcriptional regulator LysR [Ensembl]. LysR substrate...	0.03	OrthoFinder
AGT25375	N559_3737	glycine cleavage system transcriptional activator...	0.05	OrthoFinder
CRP62462	gcvA_8	Gcv operon activator [Ensembl]. LysR substrate binding...	0.03	OrthoFinder
CRP69065	gcvA_9	Gcv operon activator [Ensembl]. LysR substrate binding...	0.03	OrthoFinder
CRP69233	gcvA_10	Gcv operon activator [Ensembl]. LysR substrate binding...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0004518	nuclease activity	IEP	Enrichment
MF	GO:0004529	exodeoxyribonuclease activity	IEP	Enrichment
MF	GO:0004536	deoxyribonuclease activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006739	NADP metabolic process	IEP	Enrichment
BP	GO:0006741	NADP biosynthetic process	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008237	metallopeptidase activity	IEP	Enrichment
MF	GO:0008773	[protein-PII] uridylyltransferase activity	IEP	Enrichment
MF	GO:0008852	exodeoxyribonuclease I activity	IEP	Enrichment
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Enrichment
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Enrichment
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Enrichment
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Enrichment
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Enrichment
MF	GO:0070569	uridylyltransferase activity	IEP	Enrichment
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	91	291
IPR000847	Tscrpt_reg_HTH_LysR	8	67

External Links

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KNA56287 (VCV51_030605)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation