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  5. KNA58588

KNA58588 (VCV51_031119)


Aliases : VCV51_031119

Description : psp operon transcriptional activator [Ensembl]. Sigma-54 interaction domain, Bacterial regulatory protein [Interproscan].


Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA58588
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AAC73433 prpR, b0330 propionate catabolism operon regulatory protein... 0.03 OrthoFinder
AAC75280 atoC, b2220 fused response regulator of ato operon, in two-component... 0.02 OrthoFinder
AAL19321 STM0367, prpR regulator for prp operon (EBP family) [Ensembl].... 0.03 OrthoFinder
AAL20600 STM1683, tyrR transcriptional regulator of aromatic amino acid... 0.04 OrthoFinder
AGT22853 N559_1079 sigma-54 dependent transcriptional regulator [Ensembl].... 0.03 OrthoFinder
AGT22959 N559_1193 anaerobic nitric oxide reductase transcription regulator... 0.03 OrthoFinder
AGT26495 N559_4911 fused DNA-binding response regulator [Ensembl]. Response... 0.03 OrthoFinder
CCL18448 BN171_2340008 Transcriptional regulator, sigma-54-dependent [Ensembl].... 0.04 OrthoFinder
CCL19713 BN171_3410005 Putative sigma-54 interacting protein (fragment)... 0.04 OrthoFinder
CRO96924 No alias (S)-limonene 6-monooxygenase [Ensembl]. PAS fold,... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008134 transcription factor binding IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006741 NADP biosynthetic process IEP Enrichment
MF GO:0008852 exodeoxyribonuclease I activity IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002078 Sigma_54_int 5 168
IPR002197 HTH_Fis 291 325
No external refs found!