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  5. KNA59396

KNA59396 (VCV51_031296)


Aliases : VCV51_031296

Description : sigma-54 interaction domain-containing protein [Ensembl]. Sigma-54 interaction domain, Bacterial regulatory protein, Response regulator receiver domain [Interproscan].


Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA59396
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC75280 atoC, b2220 fused response regulator of ato operon, in two-component... 0.01 OrthoFinder
AAL19321 STM0367, prpR regulator for prp operon (EBP family) [Ensembl].... 0.01 OrthoFinder
AAL21739 STM2859, fhlA formate hydrogen-lyase transcriptional activator for... 0.03 OrthoFinder
AGT22959 N559_1193 anaerobic nitric oxide reductase transcription regulator... 0.03 OrthoFinder
AGT23137 N559_1375 putative 2-component transcriptional regulator... 0.04 OrthoFinder
AGT26495 N559_4911 fused DNA-binding response regulator [Ensembl]. Response... 0.02 OrthoFinder
AHY40231 CJ8421_05085 Signal-transduction regulatory protein FlgR [Ensembl].... 0.03 OrthoFinder
CCL18448 BN171_2340008 Transcriptional regulator, sigma-54-dependent [Ensembl].... 0.03 OrthoFinder
CRO21544 zraR_3 Transcriptional regulatory protein ZraR [Ensembl].... 0.02 OrthoFinder
CRO39560 dctD_1 C4-dicarboxylate transport transcriptional regulatory... 0.01 OrthoFinder
CRP41187 prpR_2 Propionate catabolism operon regulatory protein... 0.01 OrthoFinder
CRP79684 zraR_6 Transcriptional regulatory protein ZraR [Ensembl].... 0.07 OrthoFinder
CRP79731 ntrC_2 Nitrogen assimilation regulatory protein [Ensembl].... 0.02 OrthoFinder
KNA55086 VCV51_031847 nitrogen regulation protein NR(I) [Ensembl]. Sigma-54... 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001539 cilium or flagellum-dependent cell motility IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0009271 phage shock IEP Enrichment
CC GO:0009288 bacterial-type flagellum IEP Enrichment
CC GO:0009424 bacterial-type flagellum hook IEP Enrichment
BP GO:0009605 response to external stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009615 response to virus IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0017013 protein flavinylation IEP Enrichment
BP GO:0030030 cell projection organization IEP Enrichment
BP GO:0040011 locomotion IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0044781 bacterial-type flagellum organization IEP Enrichment
BP GO:0048870 cell motility IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0071973 bacterial-type flagellum-dependent cell motility IEP Enrichment
BP GO:0097588 archaeal or bacterial-type flagellum-dependent cell motility IEP Enrichment
BP GO:0098586 cellular response to virus IEP Enrichment
InterPro domains Description Start Stop
IPR001789 Sig_transdc_resp-reg_receiver 4 114
IPR002078 Sigma_54_int 144 310
IPR002197 HTH_Fis 397 437
No external refs found!