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  5. KNA59407

KNA59407 (VCV51_032586)


Aliases : VCV51_032586

Description : ribosomal protein S1 [Ensembl]. S1 RNA binding domain [Interproscan].


Gene families : OG_02_0000539 (OrthoFinder) Phylogenetic Tree(s): OG0000539_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA59407
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AAC73997 rpsA, b0911 30S ribosomal subunit protein S1 [Ensembl]. S1 RNA... 0.06 OrthoFinder
AAL19915 STM0981, rpsA 30S ribosomal subunit protein S1 [Ensembl]. S1 RNA... 0.08 OrthoFinder
AGT24996 N559_3340 30S ribosomal protein S1 [Ensembl]. S1 RNA binding... 0.03 OrthoFinder
CBI66007 rpsA, HPB8_450 small subunit ribosomal protein S1 [Ensembl]. S1 RNA... 0.02 OrthoFinder
CCG26736 No alias SSU ribosomal protein S1p [Ensembl]. S1 RNA binding... 0.05 OrthoFinder
CRO41659 rpsA 30S ribosomal protein S1 [Ensembl]. S1 RNA binding... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003029 S1_domain 362 434
IPR003029 S1_domain 189 260
IPR003029 S1_domain 104 171
IPR003029 S1_domain 275 347
IPR003029 S1_domain 449 520
IPR003029 S1_domain 18 86
No external refs found!