KNA59752 (VCV51_032447)

Aliases : VCV51_032447

Description : lysR family Bacterial regulatory helix-turn-helix protein [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA59752
Cluster	HCCA: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
AAL21995	STM3121	putative LysR family transcriptional regulator...	0.02	OrthoFinder
AEA94108	OG1RF_11421	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT23181	N559_1423	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT23273	N559_1520, CynR	DNA-binding transcriptional regulator CynR [Ensembl]....	0.03	OrthoFinder
AGT23447	N559_1705	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT24793	N559_3132	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT26618	N559_5041	putative LysR-family transcriptional regulator...	0.05	OrthoFinder
CCL19137	BN171_2880004	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.03	OrthoFinder
CCL19204	BN171_2950006	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.05	OrthoFinder
CRO86371	oxyR_2	Morphology and auto-aggregation control protein...	0.03	OrthoFinder
CRP00540	cysL_3	CysJI operon transcriptional activator [Ensembl]. LysR...	0.02	OrthoFinder
CRP03013	gltC_5	HTH-type transcriptional regulator GltC [Ensembl]. LysR...	0.03	OrthoFinder
CRP45508	benM_8	Ben and cat operon transcriptional regulator [Ensembl]....	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006417	regulation of translation	IEP	Enrichment
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Enrichment
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Enrichment
BP	GO:0032324	molybdopterin cofactor biosynthetic process	IEP	Enrichment
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Enrichment
BP	GO:0051246	regulation of protein metabolic process	IEP	Enrichment
BP	GO:0071805	potassium ion transmembrane transport	IEP	Enrichment
BP	GO:0072344	rescue of stalled ribosome	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	101	283
IPR000847	Tscrpt_reg_HTH_LysR	3	62

External Links

No external refs found!

KNA59752 (VCV51_032447)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation