KNA59858 (VCV51_032269)

Aliases : VCV51_032269

Description : LysR substrate binding domain-containing protein [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA59858
Cluster	HCCA: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
AAL22236	STM3367, yhcS	putative LysR family transcriptional regulator...	0.02	OrthoFinder
AGT22322	N559_0518	putative DNA-binding transcriptional regulator...	0.03	OrthoFinder
AGT22715	N559_0927	LysR family transcriptional regulator protein [Ensembl]....	0.03	OrthoFinder
AGT22904	N559_1134	putative LysR-family transcriptional regulator...	0.04	OrthoFinder
AGT24894	N559_3234	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT26014	N559_4407	putative HTH-type transcriptional regulator [Ensembl]....	0.03	OrthoFinder
CRN86190	dmlR_3	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRO42652	dmlR_14	D-malate degradation protein R [Ensembl]. LysR substrate...	0.01	OrthoFinder
CRO43057	dmlR_15	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRP32263	dmlR_28	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRP37683	dmlR_29	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRP53621	dmlR_30	D-malate degradation protein R [Ensembl]. LysR substrate...	0.01	OrthoFinder
CRP61961	dmlR_32	D-malate degradation protein R [Ensembl]. LysR substrate...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	Enrichment
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Enrichment
MF	GO:0008236	serine-type peptidase activity	IEP	Enrichment
MF	GO:0008238	exopeptidase activity	IEP	Enrichment
MF	GO:0009002	serine-type D-Ala-D-Ala carboxypeptidase activity	IEP	Enrichment
MF	GO:0017171	serine hydrolase activity	IEP	Enrichment
BP	GO:0031388	organic acid phosphorylation	IEP	Enrichment
BP	GO:0034220	ion transmembrane transport	IEP	Enrichment
MF	GO:0052855	ADP-dependent NAD(P)H-hydrate dehydratase activity	IEP	Enrichment
MF	GO:0070008	serine-type exopeptidase activity	IEP	Enrichment
BP	GO:0071805	potassium ion transmembrane transport	IEP	Enrichment
BP	GO:0098655	cation transmembrane transport	IEP	Enrichment
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Enrichment
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	92	293
IPR000847	Tscrpt_reg_HTH_LysR	9	67

External Links

No external refs found!

KNA59858 (VCV51_032269)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation