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  5. KNA60791

KNA60791 (VCV51_032053)


Aliases : VCV51_032053

Description : sigma-54 interaction domain-containing protein [Ensembl]. GAF domain, Sigma-54 interaction domain [Interproscan].


Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA60791
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AAC74385 pspF, b1303 psp operon transcriptional activator [Ensembl]. Sigma-54... 0.05 OrthoFinder
AAC75280 atoC, b2220 fused response regulator of ato operon, in two-component... 0.01 OrthoFinder
AAC75607 glrR, b2554 response regulator regulating glmY sRNA in two-component... 0.04 OrthoFinder
AAL19321 STM0367, prpR regulator for prp operon (EBP family) [Ensembl].... 0.03 OrthoFinder
AAL19603 STM0652 putative sigma-54 dependent transcriptional regulator... 0.02 OrthoFinder
AAL20608 STM1691, pspF transcription activator [Ensembl]. Sigma-54 interaction... 0.02 OrthoFinder
AAL21262 STM2361 putative regulatory protein [Ensembl]. PAS fold,... 0.04 OrthoFinder
AAL21719 STM2839, ygaA putative EBP family regulator [Ensembl]. GAF domain,... 0.03 OrthoFinder
AAL22383 STM3522, rtcR sigma N (sigma 54)-dependent regulator of rtcBA... 0.02 OrthoFinder
AGT22853 N559_1079 sigma-54 dependent transcriptional regulator [Ensembl].... 0.04 OrthoFinder
AGT22959 N559_1193 anaerobic nitric oxide reductase transcription regulator... 0.07 OrthoFinder
AGT26495 N559_4911 fused DNA-binding response regulator [Ensembl]. Response... 0.02 OrthoFinder
AKI50171 L2625_02335 sigma-54 dependent transcriptional regulator [Ensembl].... 0.03 OrthoFinder
AKP15503 zraR, WX61_01457 Transcriptional regulatory protein ZraR [Ensembl].... 0.02 OrthoFinder
CCL18448 BN171_2340008 Transcriptional regulator, sigma-54-dependent [Ensembl].... 0.03 OrthoFinder
CCL19199 BN171_2950001 Transcriptional regulator, sigma-54-dependent [Ensembl].... 0.03 OrthoFinder
CCL19358 BN171_3080005 Transcriptional regulator, sigma-54-dependent [Ensembl].... 0.04 OrthoFinder
CCL19713 BN171_3410005 Putative sigma-54 interacting protein (fragment)... 0.04 OrthoFinder
CRN65608 qseF Quorum-sensing regulator protein F [Ensembl]. Sigma-54... 0.01 OrthoFinder
CRO96924 No alias (S)-limonene 6-monooxygenase [Ensembl]. PAS fold,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0034258 nicotinamide riboside transport IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003018 GAF 23 156
IPR002078 Sigma_54_int 194 360
No external refs found!