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Aliases : cspI, b1552
Description : Qin prophage; cold shock protein [Ensembl]. 'Cold-shock' DNA-binding domain [Interproscan].
Gene families : OG_02_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AAC74625 | |
| Cluster | HCCA: Cluster_25 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AAL20906 | STM1996, cspB | putative cold-shock protein [Ensembl]. 'Cold-shock'... | 0.05 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000150 | DNA strand exchange activity | IEP | Enrichment |
| BP | GO:0006109 | regulation of carbohydrate metabolic process | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006310 | DNA recombination | IEP | Enrichment |
| BP | GO:0006401 | RNA catabolic process | IEP | Enrichment |
| BP | GO:0006402 | mRNA catabolic process | IEP | Enrichment |
| BP | GO:0006950 | response to stress | IEP | Enrichment |
| BP | GO:0007154 | cell communication | IEP | Enrichment |
| BP | GO:0009271 | phage shock | IEP | Enrichment |
| BP | GO:0009432 | SOS response | IEP | Enrichment |
| BP | GO:0009605 | response to external stimulus | IEP | Enrichment |
| BP | GO:0009607 | response to biotic stimulus | IEP | Enrichment |
| BP | GO:0009615 | response to virus | IEP | Enrichment |
| MF | GO:0009881 | photoreceptor activity | IEP | Enrichment |
| MF | GO:0009882 | blue light photoreceptor activity | IEP | Enrichment |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Enrichment |
| BP | GO:0009991 | response to extracellular stimulus | IEP | Enrichment |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| BP | GO:0031668 | cellular response to extracellular stimulus | IEP | Enrichment |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Enrichment |
| MF | GO:0038023 | signaling receptor activity | IEP | Enrichment |
| BP | GO:0043207 | response to external biotic stimulus | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Enrichment |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:0044419 | biological process involved in interspecies interaction between organisms | IEP | Enrichment |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Enrichment |
| BP | GO:0048519 | negative regulation of biological process | IEP | Enrichment |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Enrichment |
| BP | GO:0050896 | response to stimulus | IEP | Enrichment |
| BP | GO:0051302 | regulation of cell division | IEP | Enrichment |
| BP | GO:0051707 | response to other organism | IEP | Enrichment |
| BP | GO:0051782 | negative regulation of cell division | IEP | Enrichment |
| MF | GO:0060089 | molecular transducer activity | IEP | Enrichment |
| BP | GO:0071496 | cellular response to external stimulus | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| BP | GO:0098586 | cellular response to virus | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002059 | CSP_DNA-bd | 5 | 69 |
| UniProtKB | P0A986 |