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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | 11168-O,WT,biofilm extract | 11168-O,WT,planktonic cell extract | CG8433,WT,mid-log,Mueller Hinton agar plate | CG8433,WT,mid-log,Mueller Hinton broth | CG8433,WT,mid-log,blood agar plate | NCTC11168,CRISPR-tracrRNA-KO | NCTC11168,WT | NCTC11168,WT,Fe limited | NCTC11168,WT,Fe replete | NCTC11168,WT,chicken intestinal mucus | NCTC11168,WT,cow intestinal mucus | NCTC11168,WT,defined media | NCTC11168,WT,pig intestinal mucus | NCTC11168,WT,sheep intestinal mucus | NCTC11168,WT,turkey intestinal mucus | NCTC11168,cas9-KO | NCTC11168,crRNA3-KO | NCTC11168,fur-KO,Fe limited | NCTC11168,fur-KO,Fe replete | NCTC11168,fur-KO,perR-KO,Fe limited | NCTC11168,fur-KO,perR-KO,Fe replete | NCTC11168,perR-KO,Fe limited | NCTC11168,perR-KO,Fe replete | NCTC11168,tracrRNA-KO | NCTC12661,WT,exponential,spiral | NCTC12661,WT,stationary,filamentous | NCTC12661,WT,stationary,spiral | PT14,WT,exponential,spiral | PT14,WT,stationary,filamentous | PT14,WT,stationary,spiral | Sheep Abortion,WT,24h bile inoculate | Sheep Abortion,WT,24h gallbladder inoculate | Sheep Abortion,WT,2h bile inoculate | Sheep Abortion,WT,2h gallbladder inoculate | Sheep Abortion,WT,laboratory culture |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AHY39308 (CJ8421_00175) | - | - | 3.91 | 2.13 | 3.96 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY39310 (CJ8421_00185) | -1.09 | -0.02 | 0.72 | 0.41 | 2.08 | -2.45 | -2.64 | 0.26 | -1.21 | 0.36 | -0.26 | -0.32 | -0.03 | -0.28 | 0.07 | -2.58 | -2.71 | -0.08 | -1.2 | -0.25 | -1.11 | 1.16 | 0.43 | -2.63 | -0.28 | -2.08 | -2.11 | 1.23 | -0.24 | 0.38 | 0.69 | -0.24 | 0.35 | 0.32 | 0.1 |
AHY39313 (CJ8421_00200) | -1.28 | -2.15 | -1.26 | -1.9 | 1.98 | -4.45 | -4.38 | -1.25 | -0.27 | 0.2 | 1.55 | 1.48 | 1.92 | 1.29 | 0.97 | -4.9 | -5.07 | -1.54 | -1.09 | -1.0 | 0.16 | 0.3 | 0.69 | -4.28 | 0.24 | 0.12 | -0.5 | 0.39 | -1.5 | -0.52 | -0.26 | -2.5 | -0.79 | -1.55 | -0.51 |
AHY39318 (flgD) | -1.03 | 0.07 | 0.31 | 0.86 | 1.95 | -1.77 | -2.0 | -3.02 | -0.9 | -0.68 | 0.17 | -0.31 | 0.46 | -0.19 | 0.21 | -2.11 | -2.16 | -4.46 | -1.37 | -3.81 | -1.41 | -0.15 | -0.08 | -1.52 | 0.4 | -3.52 | -2.24 | 0.57 | -0.93 | 0.62 | 0.81 | 1.8 | 1.1 | 1.13 | 0.2 |
AHY39330 (CJ8421_00285) | -4.35 | -4.61 | 3.35 | 3.34 | 3.87 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -9.65 | - | - | - | - | - | - | - | - |
AHY39595 (CJ8421_01700) | - | - | 4.26 | 2.85 | 3.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY39596 (CJ8421_01705) | 2.52 | 2.39 | 3.79 | 1.52 | 2.86 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY39597 (CJ8421_01710) | 3.77 | 0.09 | 3.17 | 2.43 | 2.56 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY39647 (CJ8421_01960) | -3.59 | -0.84 | -0.68 | 0.09 | 2.31 | -3.92 | -3.82 | -2.89 | -0.97 | 0.29 | 0.72 | -0.27 | 0.68 | 0.43 | 0.65 | -3.75 | -3.95 | -2.91 | -1.11 | -3.03 | -1.88 | -1.41 | -1.12 | -3.7 | 0.75 | -0.94 | -1.62 | 0.93 | -0.2 | 1.63 | 0.59 | 1.15 | 0.91 | 0.45 | 0.38 |
AHY39679 (CJ8421_02120) | - | -2.9 | 4.08 | 3.33 | 2.99 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY39680 (CJ8421_02125) | - | - | 4.34 | 3.17 | 2.53 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY39681 (CJ8421_02130) | - | - | 4.23 | 3.24 | 2.78 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY39765 (fliE) | -3.74 | -1.58 | -0.38 | -0.46 | 0.16 | -0.31 | -0.76 | 0.12 | -1.04 | -0.02 | 0.51 | -0.43 | 0.62 | 0.43 | 0.08 | -0.5 | -0.3 | 0.04 | -1.33 | -0.33 | -1.44 | 0.06 | -0.92 | -0.46 | 0.54 | 0.44 | -0.13 | 0.32 | 0.58 | 1.11 | 0.06 | 1.38 | 0.05 | 0.4 | -0.22 |
AHY39766 (flgC) | -2.26 | -0.73 | -0.75 | -0.64 | 0.45 | -0.34 | -0.44 | -0.33 | -0.99 | -0.04 | 0.67 | -0.38 | 0.92 | 0.5 | 0.31 | -0.6 | -0.49 | -0.52 | -1.19 | -0.74 | -1.37 | -0.12 | -0.96 | -0.29 | 0.67 | 0.08 | 0.01 | 0.82 | 0.5 | 1.02 | -0.01 | 1.26 | 0.01 | 0.16 | -0.42 |
AHY39767 (flgB) | -1.12 | 0.56 | -0.82 | -1.1 | 1.09 | -1.4 | -1.47 | -1.67 | -0.98 | -0.97 | -0.8 | 0.03 | -0.21 | -0.79 | -0.92 | -1.53 | -1.7 | -2.14 | -1.48 | -2.19 | -1.53 | 0.19 | -0.61 | -1.32 | 0.91 | -1.39 | -1.33 | 1.15 | 0.16 | 1.61 | 0.66 | 2.4 | 0.49 | 0.87 | 0.17 |
AHY39865 (CJ8421_03070) | - | - | 3.81 | 3.41 | 3.37 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY39866 (CJ8421_03075) | - | - | 4.07 | 3.38 | 2.96 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY39917 (flgH) | 0.24 | 1.04 | -0.25 | 0.31 | 2.77 | -1.96 | -2.33 | -3.2 | -1.14 | -0.93 | -0.11 | -0.31 | 0.55 | -0.22 | -0.06 | -2.37 | -2.18 | -4.34 | -1.65 | -3.74 | -1.97 | -0.07 | -0.61 | -1.72 | 0.67 | -3.17 | -2.45 | 0.37 | -1.0 | 0.86 | 0.36 | 1.78 | 0.24 | 0.27 | -0.58 |
AHY39927 (CJ8421_03430) | -0.75 | 0.36 | -0.41 | 0.24 | 1.82 | -1.72 | -1.98 | -2.79 | -0.94 | -1.35 | -0.3 | -0.23 | 0.3 | -0.53 | -0.46 | -2.04 | -2.07 | -3.69 | -1.55 | -3.18 | -1.57 | 0.08 | -0.33 | -1.56 | 0.86 | -3.01 | -2.73 | 0.75 | 0.02 | 1.41 | 0.6 | 2.19 | 0.88 | 0.73 | 0.23 |
AHY39928 (flgG) | -0.56 | -0.42 | -0.33 | 0.33 | 1.89 | -3.12 | -3.18 | -1.87 | -0.93 | -1.34 | -0.37 | -0.25 | 0.1 | -0.88 | -0.5 | -3.53 | -3.43 | -2.7 | -1.46 | -2.52 | -1.46 | -0.08 | -0.34 | -2.6 | 0.92 | -3.02 | -2.07 | 0.87 | -0.06 | 1.43 | 0.64 | 2.2 | 1.07 | 1.11 | 0.25 |
AHY39986 (CJ8421_03785) | -3.27 | -0.27 | -0.77 | -0.24 | 2.04 | -2.93 | -3.17 | -1.41 | -1.54 | 0.43 | 0.54 | 0.0 | 0.73 | 0.46 | 0.37 | -3.25 | -2.95 | -1.59 | -1.77 | -1.7 | -1.44 | -0.34 | -0.97 | -2.79 | 0.64 | -1.06 | -0.34 | 1.32 | -0.39 | 1.27 | 0.06 | 1.27 | 1.07 | 0.48 | 0.03 |
AHY40029 (CJ8421_04000) | - | - | 3.45 | 3.6 | 3.59 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40030 (CJ8421_04005) | - | - | 2.83 | 3.19 | 4.23 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40031 (CJ8421_04010) | - | - | 3.08 | 3.18 | 4.13 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -6.21 | - | - | - | - |
AHY40035 (CJ8421_04030) | - | - | 2.27 | 3.02 | 2.63 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.23 | 2.15 | 0.49 | 1.87 | 0.79 |
AHY40036 (CJ8421_04035) | - | - | 3.19 | 4.02 | 3.27 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40037 (CJ8421_04040) | - | - | 3.09 | 3.71 | 3.75 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40082 (CJ8421_04275) | 0.4 | 1.31 | -0.29 | 0.17 | 2.87 | -1.98 | -2.2 | -2.17 | -1.63 | 1.14 | 1.33 | 0.64 | 1.96 | 1.42 | 1.81 | -1.94 | -2.03 | -2.06 | -1.36 | -2.92 | -2.08 | -0.36 | -0.76 | -1.64 | -1.35 | -3.31 | -2.94 | -4.33 | -5.01 | -2.77 | -3.04 | -2.59 | -3.69 | -3.32 | -3.33 |
AHY40101 (CJ8421_04390) | 0.21 | 0.56 | -1.17 | -0.58 | 2.04 | -2.18 | -2.36 | -2.86 | -1.23 | -0.37 | 0.29 | 0.14 | 0.68 | 0.14 | 0.34 | -2.68 | -2.54 | -3.73 | -1.51 | -3.49 | -1.81 | -0.63 | -0.41 | -2.03 | 0.33 | -3.31 | -2.53 | 0.03 | -0.67 | 0.69 | 0.8 | 2.45 | 0.42 | 1.14 | -0.29 |
AHY40219 (CJ8421_05025) | - | - | 4.4 | - | 3.79 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40233 (CJ8421_05095) | -3.8 | -0.4 | 0.06 | 0.48 | 1.93 | -2.08 | -1.9 | -1.97 | -0.94 | -0.7 | -0.23 | -0.19 | 0.03 | -0.49 | -0.5 | -1.89 | -2.36 | -2.01 | -1.41 | -1.95 | -1.42 | -0.18 | -0.4 | -1.67 | 0.97 | -1.41 | -1.35 | 0.62 | -0.03 | 1.12 | 0.7 | 1.64 | 1.21 | 1.13 | 0.61 |
AHY40346 (CJ8421_05670) | - | - | 4.05 | 2.1 | 3.45 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.66 | - |
AHY40446 (CJ8421_06195) | -3.21 | 0.94 | -1.15 | -0.58 | 2.27 | -0.67 | -0.87 | -2.93 | -0.93 | -0.91 | -0.04 | 0.43 | 0.87 | 0.01 | -0.22 | -1.14 | -0.93 | -3.58 | -1.61 | -3.29 | -1.63 | -0.16 | -0.91 | -0.23 | 0.79 | -2.99 | -0.62 | -0.2 | -1.85 | -0.32 | 0.44 | 2.47 | -0.18 | 0.73 | -0.66 |
AHY40462 (CJ8421_06275) | -0.21 | -0.18 | 2.09 | 2.12 | 2.18 | -4.87 | -4.5 | -1.48 | -0.31 | 0.04 | 0.08 | -0.75 | 0.03 | -0.12 | 0.03 | -4.45 | -4.86 | -1.26 | -0.27 | -1.06 | -0.31 | -0.68 | -0.1 | -4.73 | 0.0 | -0.46 | 0.26 | 0.36 | -0.47 | -0.41 | -0.46 | -2.16 | -0.13 | -0.8 | -0.12 |
AHY40495 (CJ8421_06440) | 0.12 | 0.23 | -0.28 | 0.22 | 3.14 | -3.43 | -3.52 | -2.27 | -1.79 | -0.38 | 0.38 | -0.57 | 0.71 | 0.08 | 0.27 | -3.79 | -3.54 | -2.79 | -1.97 | -2.62 | -2.03 | -0.6 | -1.05 | -3.23 | -0.08 | -2.1 | -1.7 | -0.05 | -1.74 | -0.27 | 0.4 | 1.53 | 0.94 | 0.74 | -0.0 |
AHY40534 (CJ8421_06685) | -0.34 | -0.16 | 0.77 | 0.61 | 2.26 | -3.82 | -3.53 | -2.55 | -0.76 | 0.69 | 0.88 | -0.32 | 0.7 | 0.58 | 1.04 | -3.67 | -3.91 | -3.43 | -2.71 | -3.95 | -2.52 | -1.78 | -0.79 | -3.36 | -0.3 | -2.32 | -3.18 | -0.51 | -1.18 | 0.26 | 0.57 | 0.72 | 1.44 | 1.03 | 1.0 |
AHY40551 (CJ8421_06800) | -1.24 | 1.41 | -1.21 | -0.11 | 0.21 | 0.08 | 0.26 | -3.84 | 0.74 | -4.42 | -4.28 | -1.35 | -4.19 | -4.6 | -7.43 | 0.32 | 0.46 | 0.53 | 0.39 | 0.59 | 0.94 | -2.81 | -0.29 | 0.64 | 2.2 | -5.11 | -2.65 | 0.74 | -0.16 | 0.04 | 0.1 | 0.64 | 0.03 | -0.36 | -0.56 |
AHY40642 (flgI) | -1.29 | -1.12 | -0.47 | 0.01 | 2.96 | -1.33 | -1.38 | -3.49 | -1.49 | -0.29 | 0.59 | -0.53 | 1.1 | 0.31 | 0.64 | -1.44 | -1.7 | -4.84 | -1.99 | -4.31 | -2.06 | -0.4 | -0.69 | -1.16 | 0.62 | -3.15 | -2.29 | 0.49 | -0.9 | 1.11 | -0.07 | 1.2 | 0.25 | 0.32 | -0.48 |
AHY40646 (flgK) | 0.79 | 0.1 | -0.07 | 0.43 | 2.19 | -2.33 | -2.41 | -2.36 | -0.82 | -0.19 | 0.3 | -0.21 | 0.59 | 0.14 | 0.27 | -2.88 | -2.61 | -3.13 | -1.28 | -3.05 | -1.56 | -0.28 | -0.27 | -2.1 | 0.17 | -2.03 | -2.02 | -0.2 | -0.99 | 0.26 | 0.49 | 2.12 | 0.51 | 1.01 | -0.2 |
AHY40702 (CJ8421_07640) | - | - | 4.12 | 2.62 | 3.52 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40721 (CJ8421_07735) | - | - | 3.84 | 3.39 | 3.35 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40724 (CJ8421_07750) | - | - | 3.82 | 3.64 | 3.06 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -6.73 | - | - | - | - | - | - | - | - | - | - |
AHY40726 (CJ8421_07760) | 2.71 | 1.17 | 3.83 | 2.48 | 2.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40842 (CJ8421_08350) | - | - | 3.62 | 2.7 | 4.02 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40843 (CJ8421_08355) | - | - | 3.4 | 3.3 | 3.87 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40844 (CJ8421_08360) | - | - | 4.32 | 3.24 | 2.47 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40845 (CJ8421_08365) | - | - | 3.74 | 3.26 | 3.59 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40846 (CJ8421_08370) | - | - | 3.86 | 3.39 | 3.32 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40847 (CJ8421_08375) | - | - | 4.09 | 2.57 | 3.59 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40848 (CJ8421_08380) | - | - | 3.62 | 3.66 | 3.34 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40851 (CJ8421_08395) | - | - | 3.66 | 3.29 | 3.65 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40852 (CJ8421_08400) | - | - | 3.44 | 3.4 | 3.76 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40853 (CJ8421_08405) | - | - | 3.61 | 0.39 | 4.42 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40854 (CJ8421_08410) | - | - | 3.03 | 2.01 | 4.51 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40855 (CJ8421_08415) | - | - | 4.0 | - | 4.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40856 (CJ8421_08420) | - | - | 4.01 | - | 4.24 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
AHY40857 (CJ8421_08425) | - | - | 3.7 | 3.37 | 3.54 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.