Heatmap: Cluster_61 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
strain_5001420,control,fromUrine
strain_5001420,fromUrine
ch1034,13h_old_biofilm,biofilm_dispersed
ch1034,13h_old_biofilm,sessile
ch1034,7h_old_biofilm,sessile
ch1034,Log,planktonic
ch1034,Stationary,planktonic
control,fromNasalSwab,fromSwine
dmc1097
dmc1097,control,fromBlood
dmc1097,fromBlood
ekp16,fromSputum
eugenol,fromNasalSwab,fromSwine
fromBlood
fromHospitalPatients
fromRectalSwab
fromUrine
je01
k26,mero_susceptible,fromHospitalPatients
k56,mero_resistant,fromHospitalPatients
kctc2242
kp4,FeLimited,fromRespiratoryTract
kpr1,+CTX
kpr1,+gent
kpr1,+mero
kpr1,+TMP/SMX
kpr1,control
kpr2,+CTX
kpr2,+gent
kpr2,+mero
kpr2,+TMP/SMX
kpr2,control
kps1,+CTX
kps1,+gent
kps1,+mero
kps1,+TMP/SMX
kps1,control
kps2,+CTX
kps2,+gent
kps2,+mero
kps2,+TMP/SMX
kps2,control
mrsn 1319
ms6671
njst258-1,FeLimited,fromUrine
njst258-1,fromUrine
rb011,+mero,mero_resistant
rb011,control,mero_resistant
rb012,+gent,gent_resistant
rb012,control,gent_resistant
rb013,+cip,cip_resistant
rb013,control,cip_resistant
rb039,+cip,cip_resistant
rb039,+mero,mero_susceptible
rb039,control,cip_resistant
rb039,control,mero_susceptible
rb040,+cip,cip_susceptible
rb040,+gent,gent_susceptible
rb040,control,cip_susceptible
rb040,control,gent_susceptible
rb041,+cip,cip_susceptible
rb041,control,cip_susceptible
rb121,+gent,gent_susceptible
rb121,+mero,mero_susceptible
rb121,control,gent_susceptible
rb121,control,mero_susceptible
rb122,+gent,gent_resistant
rb122,control,gent_resistant
rb257,+mero,mero_resistant
rb257,control,mero_resistant
uhkpc05,FeLimited,fromBlood
uhkpc05,fromBlood
uhkpc07
uhkpc07,control,fromUrine
uhkpc07,fromUrine
uhkpc18
uhkpc18,control,fromUrine
uhkpc18,fromUrine
uhkpc33
uhkpc33,control,fromUrine
uhkpc33,fromUrine
uhkpc48
uhkpc48,FeLimited,fromUrine
uhkpc67
uhkpc67,control,fromBlood
uhkpc67,fromBlood
vakpc297
vakpc297,FeLimited,fromUrine
AGT24519 (N559_2848)
0.12 0.2 -0.63 -0.16 -0.32 -2.43 0.43 -0.65 -2.54 0.61 0.76 -1.66 0.41 -0.97 -0.98 -0.03 -0.89 -3.06 0.66 0.43 1.23 -1.12 0.1 0.3 1.37 0.06 0.52 -0.07 0.2 0.68 0.62 0.15 -0.45 -1.59 0.22 0.39 -0.32 -0.26 -1.23 0.05 0.37 0.01 -0.63 -0.61 1.09 -1.58 1.22 1.35 0.2 -0.03 0.07 -0.01 -0.09 0.36 -0.07 0.11 -0.05 -1.56 -0.42 0.14 1.29 0.01 -1.59 0.07 -0.2 -0.01 0.3 0.24 0.52 0.34 0.07 -2.76 -3.02 0.22 0.12 -3.39 0.33 0.42 -2.36 0.3 0.42 -2.89 -0.81 -2.61 0.27 0.19 -2.28 -0.54
AGT24543 (N559_2874)
0.36 0.11 -0.77 0.45 1.08 -2.44 -0.83 0.19 -1.46 0.38 0.07 -1.29 -0.77 -0.9 -0.59 -1.41 -0.71 -3.96 0.27 0.43 -0.67 -1.48 -0.57 -0.51 1.81 -0.45 0.37 -0.65 -0.11 0.96 -0.04 -0.13 -1.0 -0.5 -0.4 0.07 -0.89 -0.4 -0.5 0.18 0.41 -0.06 -0.7 -0.96 0.29 -0.74 1.66 1.66 -0.11 -0.29 0.17 0.14 0.08 -0.36 0.11 -0.84 -0.03 -0.64 -0.07 0.02 0.14 -0.48 -0.5 -0.13 -0.54 -0.02 -0.51 -0.69 0.78 0.47 0.85 -2.5 -2.19 1.58 0.89 -3.14 0.41 -0.02 -1.22 1.12 0.79 -2.49 -0.48 -1.75 0.8 0.25 -1.78 0.49

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.