Heatmap: Cluster_55 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	strain_5001420,control,fromUrine	strain_5001420,fromUrine	ch1034,13h_old_biofilm,biofilm_dispersed	ch1034,13h_old_biofilm,sessile	ch1034,7h_old_biofilm,sessile	ch1034,Log,planktonic	ch1034,Stationary,planktonic	control,fromNasalSwab,fromSwine	dmc1097	dmc1097,control,fromBlood	dmc1097,fromBlood	ekp16,fromSputum	eugenol,fromNasalSwab,fromSwine	fromBlood	fromHospitalPatients	fromRectalSwab	fromUrine	je01	k26,mero_susceptible,fromHospitalPatients	k56,mero_resistant,fromHospitalPatients	kctc2242	kp4,FeLimited,fromRespiratoryTract	kpr1,+CTX	kpr1,+gent	kpr1,+mero	kpr1,+TMP/SMX	kpr1,control	kpr2,+CTX	kpr2,+gent	kpr2,+mero	kpr2,+TMP/SMX	kpr2,control	kps1,+CTX	kps1,+gent	kps1,+mero	kps1,+TMP/SMX	kps1,control	kps2,+CTX	kps2,+gent	kps2,+mero	kps2,+TMP/SMX	kps2,control	mrsn 1319	ms6671	njst258-1,FeLimited,fromUrine	njst258-1,fromUrine	rb011,+mero,mero_resistant	rb011,control,mero_resistant	rb012,+gent,gent_resistant	rb012,control,gent_resistant	rb013,+cip,cip_resistant	rb013,control,cip_resistant	rb039,+cip,cip_resistant	rb039,+mero,mero_susceptible	rb039,control,cip_resistant	rb039,control,mero_susceptible	rb040,+cip,cip_susceptible	rb040,+gent,gent_susceptible	rb040,control,cip_susceptible	rb040,control,gent_susceptible	rb041,+cip,cip_susceptible	rb041,control,cip_susceptible	rb121,+gent,gent_susceptible	rb121,+mero,mero_susceptible	rb121,control,gent_susceptible	rb121,control,mero_susceptible	rb122,+gent,gent_resistant	rb122,control,gent_resistant	rb257,+mero,mero_resistant	rb257,control,mero_resistant	uhkpc05,FeLimited,fromBlood	uhkpc05,fromBlood	uhkpc07	uhkpc07,control,fromUrine	uhkpc07,fromUrine	uhkpc18	uhkpc18,control,fromUrine	uhkpc18,fromUrine	uhkpc33	uhkpc33,control,fromUrine	uhkpc33,fromUrine	uhkpc48	uhkpc48,FeLimited,fromUrine	uhkpc67	uhkpc67,control,fromBlood	uhkpc67,fromBlood	vakpc297	vakpc297,FeLimited,fromUrine
AGT22509 (N559_0716)	-0.31	-0.84	0.32	0.44	1.13	0.81	1.2	-2.45	-3.15	-0.89	-1.07	-0.09	-2.78	0.35	-1.93	0.46	0.38	0.74	-1.66	-1.35	-0.57	-1.54	0.31	0.79	0.56	-0.06	0.54	-0.3	0.43	0.75	0.5	0.18	0.24	0.78	0.53	0.38	0.15	0.21	0.44	0.77	0.47	0.13	-0.33	-2.04	-1.96	-0.51	0.43	0.68	0.43	0.6	-0.1	0.03	-0.13	0.31	-0.02	-0.28	0.3	1.02	-0.41	0.57	0.09	-0.06	0.78	0.46	0.8	-0.2	0.79	0.9	0.43	-0.23	-1.23	-4.29	-2.62	0.07	-0.29	-1.58	-0.39	-0.81	-2.71	-0.61	-1.15	-0.95	-1.12	-1.14	-0.62	-1.15	-5.91	-1.57
AGT25716 (N559_4090)	-1.12	-1.35	-0.31	-1.17	-1.68	-0.61	-0.87	-1.8	-2.15	-0.54	-1.15	0.08	-0.17	0.52	0.33	2.16	0.69	-3.1	0.61	0.67	-	-3.39	0.36	1.2	1.34	-0.11	0.97	0.11	1.12	1.51	0.03	0.3	-0.29	-0.16	1.03	-1.94	0.74	0.39	-0.41	0.15	0.07	0.21	0.41	-5.5	-1.74	0.45	1.02	0.31	1.12	0.4	-2.23	-2.2	-1.31	0.29	-1.45	-0.29	-1.53	-0.12	-1.94	0.98	-2.31	-1.92	-0.16	-0.59	1.63	-0.31	1.2	1.91	1.19	0.4	-1.6	-	-	0.3	-1.86	-2.42	-1.08	-0.73	-	-1.32	-1.27	-1.38	-1.76	0.28	-1.12	-0.98	-0.26	-0.8

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.