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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | BHI | Basal Medium | CD196,BHI | CD196,Basal Medium | CD196,Log,BHI | ClnR mutant | LB-CD16 | Log,BHI | LuxS KO | ND-CD12 | ND-CD13 | ND-CD17 | R20291 | R20291,BHI | R20291,Basal Medium | R20291,Heme+ | R20291,Log | R20291,Log,BHI | Strain 630 | Strain 630,BHI | Strain 630,Basal Medium | Strain 630,Faecal water+ | Strain 630,HPUra+ | Strain 630,Lag | Strain 630,Log | Strain 630,Log,BHI | Strain 630,Sporulating | TW11 | UK1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CCL16921 (rsbV) | -3.08 | -3.52 | -1.33 | -2.8 | -1.85 | -0.63 | 1.17 | -3.61 | -0.42 | 1.75 | 0.99 | 1.62 | 0.89 | -0.79 | -2.9 | 1.0 | -0.3 | -3.36 | 0.53 | -0.74 | -1.01 | -1.58 | 0.2 | -0.06 | -0.07 | -2.62 | -1.11 | 0.3 | 1.36 |
CCL16940 (spoIIAA) | -1.83 | 0.33 | -0.96 | 0.06 | -1.39 | -2.21 | 3.09 | -1.83 | -2.13 | 2.07 | -0.66 | 0.8 | -0.36 | -1.57 | -0.13 | -1.44 | -2.62 | -1.73 | -2.43 | -1.15 | -0.1 | 1.55 | -1.97 | -2.08 | -2.52 | -1.7 | -0.08 | -2.68 | -2.04 |
CCL16941 (spoIIAB) | -2.52 | -0.09 | -1.83 | -0.82 | -2.31 | -1.52 | 2.82 | -2.21 | -2.41 | 1.64 | -0.75 | 0.69 | -0.48 | -3.26 | -0.59 | -1.63 | -2.53 | -2.13 | -2.24 | -2.14 | -1.08 | 3.02 | -2.06 | -2.17 | -2.57 | -2.62 | 0.44 | -2.72 | -2.7 |
CCL16942 (sigF) | -3.05 | -0.72 | -2.7 | -1.42 | -3.23 | -2.22 | 3.0 | -2.58 | -2.62 | 1.69 | -0.49 | 0.9 | -0.26 | -3.64 | -1.35 | -1.15 | -2.53 | -2.94 | -2.47 | -2.63 | -1.41 | 2.89 | -2.07 | -1.79 | -2.15 | -3.3 | 0.83 | -2.63 | -1.77 |
CCL17155 (BN171_1330016) | -2.34 | -1.4 | -1.41 | -0.56 | -1.7 | -4.98 | 3.44 | -3.06 | 0.07 | 2.07 | -0.24 | 0.56 | -0.64 | -1.93 | -1.48 | -1.48 | 0.62 | -2.83 | -1.31 | -4.13 | -2.32 | -5.15 | -1.29 | -3.21 | -4.15 | -4.62 | 1.5 | -0.51 | -1.59 |
CCL17397 (BN171_1480009) | -1.67 | -2.33 | -2.01 | -2.08 | -1.23 | -0.8 | 2.94 | -2.14 | -1.55 | 0.41 | -0.16 | 0.02 | 0.82 | -0.94 | -2.5 | 1.66 | -1.49 | -1.2 | -1.0 | -1.5 | -2.41 | 0.79 | 0.14 | -0.37 | 0.11 | -2.27 | -0.27 | 0.94 | -1.22 |
CCL17560 (BN171_1550013) | -1.43 | -0.99 | -1.15 | -0.03 | -1.51 | -2.5 | 3.8 | -2.82 | -2.45 | 1.23 | -2.02 | -0.33 | -0.6 | -1.64 | -1.34 | 0.83 | -3.61 | -2.31 | -1.83 | -0.84 | 0.34 | -1.44 | -2.38 | -1.55 | -1.07 | -2.0 | -0.19 | -1.02 | -5.8 |
CCL17561 (BN171_1550014) | -1.85 | -2.19 | -1.3 | -0.57 | -2.29 | -2.41 | 3.85 | -3.33 | -4.45 | 1.46 | -1.69 | 0.45 | -0.33 | -2.26 | -2.25 | 1.2 | -3.19 | -2.75 | -1.37 | -1.34 | -0.73 | -1.57 | -1.86 | -1.37 | -0.45 | -2.3 | -0.65 | -1.62 | - |
CCL17562 (BN171_1550015) | -2.37 | -2.63 | -1.44 | -0.56 | -1.9 | -1.33 | 3.72 | -3.55 | -2.18 | 1.52 | -1.38 | 0.05 | 0.0 | -2.19 | -2.95 | 1.16 | -2.13 | -2.59 | -1.08 | -1.14 | -0.33 | -1.44 | -0.84 | -1.08 | -0.54 | -2.32 | -0.73 | -1.49 | -2.01 |
CCL17574 (BN171_1580001) | -0.08 | 0.02 | -0.47 | 0.28 | -0.62 | -0.19 | 1.89 | -1.16 | -1.39 | 0.97 | 0.03 | -0.02 | 0.1 | -1.4 | -1.55 | 0.15 | -1.51 | -1.7 | 0.01 | 0.06 | -0.38 | 0.61 | 0.8 | -1.04 | -0.38 | -0.78 | 1.11 | -0.43 | -0.51 |
CCL17774 (BN171_1790003) | -2.09 | -3.16 | -1.87 | -0.94 | -1.02 | -3.88 | 3.69 | -2.61 | -2.87 | 1.35 | -1.09 | -0.6 | 0.14 | -3.56 | -2.11 | -0.68 | -2.57 | -2.71 | -1.67 | -2.15 | -2.9 | 1.87 | -2.74 | -3.78 | -2.67 | -3.67 | 0.16 | 1.03 | -3.61 |
CCL17836 (asnB) | -0.47 | -1.29 | -0.78 | -0.67 | -1.17 | -0.7 | 1.59 | -1.66 | 0.43 | 0.72 | 0.55 | 0.16 | 0.76 | -0.31 | -1.22 | 0.09 | -0.92 | -1.04 | 0.44 | -0.21 | -0.21 | -0.03 | 0.55 | 0.23 | -0.19 | -1.1 | 1.14 | -1.03 | -0.07 |
CCL17869 (BN171_1900001) | - | - | - | - | - | -0.85 | 4.27 | - | -4.28 | 2.28 | -0.73 | 1.09 | -2.47 | -4.12 | - | - | -0.79 | - | -3.94 | - | -3.9 | - | -5.66 | -4.07 | -4.83 | - | -1.04 | -4.82 | - |
CCL18183 (BN171_2140025) | -1.57 | -2.95 | -0.16 | -0.49 | 0.02 | 0.31 | 2.4 | -1.92 | 0.09 | -0.14 | -0.03 | -0.45 | 0.72 | 0.39 | -1.24 | 0.23 | -0.16 | -0.48 | -0.35 | -0.28 | -1.26 | 0.01 | -0.33 | -0.05 | 0.27 | -0.67 | 0.22 | -0.31 | -0.55 |
CCL18351 (BN171_2230001) | -0.84 | -3.59 | -0.05 | -0.44 | 0.01 | -0.31 | 2.16 | -2.42 | 0.43 | 0.92 | 0.42 | 0.55 | 1.02 | -0.2 | -2.29 | 1.31 | -0.57 | -0.66 | -0.67 | -0.14 | -0.52 | -3.6 | -0.84 | -1.25 | -0.66 | -1.12 | -3.63 | 0.66 | 0.26 |
CCL18841 (BN171_2680010) | -0.7 | -0.31 | -0.51 | 1.02 | 0.43 | -1.88 | 3.31 | -2.17 | -0.2 | - | - | -0.45 | -0.83 | -0.87 | -0.21 | - | 0.53 | -1.38 | -1.26 | -0.18 | 0.87 | 0.96 | -2.19 | -1.85 | -3.1 | -0.77 | -0.11 | -1.13 | - |
CCL18854 (BN171_2690011) | -0.17 | -1.1 | -0.61 | -1.18 | -0.44 | -0.66 | 1.68 | -0.63 | -1.47 | 0.86 | 0.58 | 0.45 | 0.91 | -0.04 | -1.04 | 0.86 | -0.5 | -0.31 | -0.89 | 0.04 | -1.52 | 0.92 | 0.1 | -0.99 | -0.16 | -0.61 | -0.55 | -0.39 | 0.33 |
CCL19231 (uppS) | -0.86 | -2.34 | -1.35 | -0.82 | -0.55 | -1.96 | 2.39 | -0.96 | 0.02 | 0.72 | -0.23 | 0.3 | 0.23 | -1.05 | -2.47 | -0.19 | -1.02 | -0.89 | -0.5 | -1.23 | -1.51 | 1.87 | 0.73 | -0.42 | -0.75 | -1.09 | 1.08 | -0.2 | -0.9 |
CCL19329 (abgT) | -1.34 | -0.41 | -1.41 | -0.27 | -1.15 | -3.58 | 3.34 | -1.14 | -2.76 | 0.38 | -1.54 | 1.72 | -0.09 | -2.05 | -0.96 | 0.59 | -1.28 | -1.36 | -0.64 | -1.85 | -1.74 | -0.93 | 0.18 | -1.63 | -2.17 | -2.26 | -0.07 | 0.18 | -0.41 |
CCL19332 (BN171_3050006) | -3.37 | -3.33 | -2.44 | -0.89 | -4.14 | -1.09 | 2.94 | - | -1.91 | 0.29 | 0.81 | 1.83 | 0.84 | -2.93 | -3.21 | 1.13 | -1.95 | -3.23 | -0.74 | -1.87 | -1.22 | -1.89 | -0.93 | -1.4 | -1.07 | -3.44 | 1.44 | 1.28 | -1.79 |
CCL19457 (BN171_3150020) | -1.45 | -1.91 | -0.87 | -1.41 | -0.92 | -1.55 | 3.94 | -1.3 | -2.35 | 1.0 | -0.31 | -0.13 | -0.32 | -2.1 | -2.12 | 0.05 | -1.57 | -1.79 | -1.01 | -1.59 | -2.22 | -0.41 | -0.84 | -2.97 | -2.26 | -1.48 | -1.56 | - | -0.88 |
CCL19458 (BN171_3150021) | -2.09 | -2.95 | -1.78 | -1.47 | -1.46 | -2.37 | 4.19 | -2.44 | -2.2 | 0.72 | -1.11 | -0.07 | -0.22 | -2.26 | -2.12 | -0.5 | -2.18 | -1.75 | -1.29 | -2.9 | -2.38 | -0.24 | -1.64 | -2.63 | -2.83 | -3.04 | -0.91 | - | -1.63 |
CCL19459 (BN171_3150022) | -4.81 | -5.54 | -3.24 | -2.9 | -3.41 | -3.77 | 4.51 | -4.96 | -2.08 | 0.74 | -1.61 | -1.17 | -1.0 | -3.47 | -4.26 | -1.39 | -3.46 | -4.09 | -2.07 | -3.17 | -2.78 | -1.01 | -3.22 | -3.44 | -3.2 | -4.15 | -1.35 | -10.1 | -4.16 |
CCL19497 (BN171_3180021) | -0.31 | -1.58 | -0.02 | -0.17 | -0.16 | 0.7 | 1.04 | -1.15 | -0.28 | 0.29 | 0.13 | -0.5 | 0.79 | -0.02 | -1.36 | 0.99 | -0.98 | -0.74 | 0.67 | 0.6 | -0.38 | -1.7 | 0.91 | -1.47 | -0.21 | -0.61 | 0.06 | 0.45 | -0.86 |
CCL19632 (BN171_3330003) | -0.87 | -0.73 | -0.75 | -0.62 | -0.79 | -0.05 | 0.73 | -0.87 | 0.14 | 1.01 | 0.69 | 0.71 | 0.51 | -0.91 | -0.47 | 0.88 | -0.71 | -0.53 | 0.75 | 0.05 | -0.27 | -0.1 | 0.76 | -0.93 | -0.7 | -0.36 | -2.33 | -0.09 | 0.53 |
CCL19770 (BN171_3470008) | -3.64 | -7.32 | -1.57 | -2.6 | -1.65 | -1.31 | 1.24 | -6.23 | -1.13 | 0.54 | 0.57 | 0.65 | 1.59 | -1.92 | -4.02 | 2.13 | -0.11 | -2.55 | 0.83 | -1.75 | -2.22 | -1.46 | 0.96 | 0.24 | 0.95 | -4.06 | -1.85 | 0.57 | 1.02 |
CCL19771 (BN171_3470009) | -1.23 | -3.61 | -0.82 | -1.51 | -1.09 | -0.81 | 1.32 | -3.02 | -0.86 | 0.94 | 0.97 | 0.92 | 0.75 | -0.56 | -2.59 | 1.05 | -0.04 | -1.13 | 0.76 | -1.12 | -1.27 | -1.37 | 0.76 | 0.31 | 0.83 | -1.89 | -1.87 | 0.39 | 1.03 |
CCL19772 (BN171_3470010) | -1.06 | -2.94 | -0.49 | -1.89 | -0.62 | -1.0 | 1.93 | -1.26 | -2.01 | 1.33 | 0.92 | 1.17 | 0.65 | -0.1 | -2.67 | 1.1 | -0.83 | -0.84 | -0.08 | -0.52 | -2.23 | 0.11 | 0.14 | -0.97 | 0.01 | -0.91 | -2.98 | -0.02 | 1.01 |
CCL19884 (cobC) | -1.47 | -2.35 | -0.94 | -1.69 | -0.94 | -0.27 | 0.85 | -2.38 | -0.7 | 1.59 | 1.49 | 1.25 | 0.78 | -1.16 | -1.77 | 1.14 | -1.03 | -1.62 | 0.63 | -0.0 | -0.04 | -1.66 | 0.33 | -0.51 | -0.21 | -1.16 | -2.09 | -0.6 | 0.99 |
CCL19885 (cobS) | -2.35 | -2.42 | -1.36 | -2.27 | -1.43 | 0.06 | 1.05 | -2.96 | -1.71 | 1.9 | 1.57 | 1.39 | 0.98 | -2.18 | -1.74 | 1.34 | -1.22 | -1.83 | 0.56 | -1.51 | -0.46 | 0.07 | 0.02 | -0.32 | 0.02 | -2.34 | -3.67 | -1.11 | 0.9 |
CCL19886 (cobU) | -2.13 | -1.79 | -1.62 | -1.91 | -1.68 | 0.32 | 0.89 | -2.47 | -1.17 | 1.71 | 1.49 | 1.52 | 0.79 | -2.2 | -1.44 | 1.07 | -1.58 | -1.74 | 0.83 | -0.93 | 0.29 | -0.56 | -0.01 | -0.23 | 0.06 | -2.02 | -3.5 | -1.4 | 1.05 |
CCL19962 (BN171_3610005) | -2.27 | -4.29 | -0.49 | -1.89 | -1.28 | -0.46 | 2.08 | -2.68 | -3.19 | 1.12 | 0.69 | 1.03 | 0.74 | -1.49 | -3.08 | 1.59 | -1.15 | -1.81 | 0.45 | -0.56 | -1.65 | -2.0 | 0.58 | -0.39 | 0.4 | -1.89 | -0.14 | 0.54 | 0.68 |
CCL20018 (BN171_3670001) | - | - | -3.07 | -2.74 | -4.8 | -3.08 | 3.99 | -5.23 | -3.58 | 2.28 | -1.73 | -2.09 | 0.64 | -5.28 | -4.68 | -1.57 | -2.96 | -4.8 | -0.9 | -3.84 | -3.12 | -0.24 | -1.0 | -1.73 | -1.46 | - | 0.67 | -0.92 | -2.46 |
CCL20345 (BN171_4230002) | -3.97 | -3.98 | -4.56 | -4.07 | -2.99 | -3.42 | 4.31 | -4.25 | - | -1.46 | -1.28 | -1.55 | 0.23 | -4.57 | -4.36 | - | -2.71 | -4.43 | -5.63 | -2.89 | -5.36 | - | -7.01 | -3.03 | -3.65 | -3.37 | 0.78 | 1.78 | -1.04 |
CCL20444 (BN171_460008) | -1.34 | -2.53 | -0.97 | -1.94 | -1.14 | -0.53 | 2.52 | -1.81 | -3.13 | 1.4 | 0.59 | 1.07 | 0.42 | -1.36 | -1.87 | 0.22 | -0.87 | -1.04 | -0.39 | -0.7 | -2.04 | 1.22 | -0.1 | -0.64 | -0.38 | -1.52 | 0.24 | -0.5 | 0.5 |
CCL20599 (cwlD) | -0.24 | -1.77 | 0.67 | 1.07 | 1.1 | -1.96 | 2.1 | -0.16 | -3.27 | -0.66 | -0.47 | -0.43 | 0.99 | 0.04 | -1.08 | 0.32 | -0.84 | 0.37 | -0.63 | -0.61 | -1.75 | 0.57 | -1.14 | -2.19 | -0.34 | -0.55 | -0.07 | -0.46 | -0.2 |
CCL20603 (BN171_710001) | -0.93 | -1.13 | -1.07 | -0.92 | -0.87 | -0.88 | 1.34 | -0.85 | -0.93 | 0.45 | 0.48 | 0.33 | 0.57 | -1.5 | -1.21 | 0.7 | -0.24 | -0.64 | 0.2 | -0.86 | -1.22 | 0.53 | 0.85 | 0.02 | 0.56 | -1.49 | 1.28 | 0.17 | 0.2 |
CCL20615 (BN171_740003) | -1.1 | -2.65 | -0.07 | -1.17 | -0.01 | -0.66 | 0.88 | -1.74 | -0.79 | 1.25 | 1.0 | 0.49 | 0.96 | -0.33 | -1.35 | 0.73 | -0.86 | -0.42 | 0.75 | -0.33 | -0.55 | -3.61 | 0.38 | 0.28 | 0.3 | -1.49 | -1.09 | 0.43 | 0.66 |
CCL20631 (BN171_770008) | -3.34 | -4.3 | -2.4 | -2.57 | -3.45 | -0.98 | 0.79 | -5.14 | 0.5 | 1.33 | 1.02 | 0.23 | 1.29 | -2.74 | -3.31 | 1.22 | 0.14 | -3.42 | 1.16 | -2.18 | -2.32 | -1.99 | 1.03 | 0.55 | 0.81 | -3.81 | -0.67 | 1.06 | 0.88 |
CCL20667 (BN171_880003) | 0.31 | 0.14 | -0.15 | 0.53 | 0.19 | - | 3.07 | -0.22 | -1.22 | 0.91 | 0.14 | 0.31 | 1.31 | -0.61 | 0.13 | 1.02 | 0.29 | 0.22 | -5.97 | - | - | - | - | - | - | - | - | - | -0.75 |
CCL20717 (cooS) | -3.18 | 0.53 | -2.61 | 0.42 | -2.73 | -2.04 | 2.64 | -2.48 | 0.44 | 1.67 | 0.69 | 0.67 | 0.62 | -4.22 | 0.18 | -2.59 | -0.78 | -2.78 | 0.34 | -2.28 | 0.53 | -0.15 | -0.95 | -0.7 | -2.08 | -3.04 | 0.22 | -1.78 | 0.03 |
CCL20721 (fchA) | -3.36 | -0.17 | -2.98 | -0.4 | -2.6 | -1.59 | 2.92 | -2.28 | -2.03 | 2.35 | 1.36 | 1.44 | 0.39 | -4.39 | -0.39 | -2.15 | -0.81 | -2.75 | -0.96 | -3.44 | -0.59 | -0.52 | -2.72 | -2.24 | -2.47 | -3.33 | -0.94 | -1.45 | 0.72 |
CCL20722 (folD) | -2.71 | 0.41 | -2.13 | 0.38 | -1.41 | -1.65 | 2.7 | -1.49 | -2.82 | 1.98 | 1.24 | 1.37 | 0.19 | -3.83 | 0.18 | -2.11 | -0.65 | -2.13 | -0.76 | -3.03 | -0.04 | 0.12 | -2.72 | -2.28 | -2.47 | -2.52 | -1.02 | -1.72 | 0.76 |
CCL20723 (BN171_960015) | -3.47 | -0.2 | -2.79 | -0.33 | -2.44 | -1.62 | 2.76 | -2.3 | -2.85 | 2.39 | 1.36 | 1.49 | -0.11 | -4.24 | -0.53 | -2.11 | -0.16 | -2.7 | -0.59 | -3.62 | -0.61 | 0.61 | -2.55 | -2.52 | -2.83 | -3.38 | -1.31 | -1.49 | 0.71 |
CCL20724 (metF) | -2.58 | 0.73 | -2.03 | 0.56 | -1.31 | -2.1 | 2.56 | -1.37 | -2.81 | 2.21 | 1.11 | 1.2 | -0.22 | -3.44 | 0.44 | -2.53 | -0.46 | -1.98 | -0.86 | -2.83 | 0.03 | 0.28 | -2.96 | -2.41 | -2.72 | -2.47 | -1.24 | -1.35 | 0.53 |
CCL20725 (BN171_960017) | -3.95 | -0.46 | -3.84 | -0.67 | -3.23 | -2.69 | 3.0 | -2.84 | -2.87 | 2.44 | 1.36 | 1.53 | 0.35 | -5.51 | -0.81 | -2.09 | -0.68 | -3.38 | -1.0 | -4.73 | -1.04 | -0.55 | -2.96 | -2.13 | -2.42 | -4.27 | -0.8 | -1.33 | 1.01 |
CCL20726 (BN171_960018) | -3.44 | 0.52 | -3.15 | 0.41 | -2.51 | -2.05 | 2.83 | -1.99 | -3.21 | 2.12 | 1.23 | 1.5 | 0.22 | -4.69 | 0.12 | -2.41 | -0.38 | -2.75 | -0.76 | -3.83 | 0.0 | -0.76 | -2.93 | -2.36 | -2.93 | -3.51 | -1.33 | -1.48 | 0.72 |
CCL20731 (gcvH) | -1.07 | 1.1 | -0.87 | 1.18 | -1.66 | -2.32 | 2.31 | -1.6 | -0.76 | 1.06 | 0.6 | 0.55 | -0.04 | -2.77 | 0.24 | -1.4 | 0.11 | -2.25 | -0.97 | -0.47 | 1.19 | -1.4 | -1.57 | -0.76 | -1.43 | -1.98 | -0.41 | -0.6 | 0.35 |
CCL20732 (BN171_960024) | -2.28 | -0.79 | -2.07 | -0.27 | -2.42 | -1.24 | 2.31 | -2.96 | 0.47 | 1.86 | 0.92 | 1.04 | 0.19 | -3.78 | -1.3 | -0.85 | -0.33 | -3.23 | 0.51 | -1.71 | 0.35 | 0.05 | 0.06 | -0.69 | -1.49 | -2.72 | 0.27 | -0.72 | 0.46 |
CCL20733 (BN171_960025) | -2.38 | -0.86 | -1.8 | -0.18 | -2.07 | -1.58 | 2.37 | -2.79 | 0.24 | 1.78 | 1.06 | 0.99 | 0.31 | -3.12 | -1.27 | -1.05 | -0.55 | -3.13 | 0.38 | -1.64 | 0.22 | 0.38 | -0.1 | -0.61 | -1.38 | -2.6 | 0.43 | -1.4 | 0.59 |
CCL20734 (BN171_960026) | -3.11 | -1.58 | -2.19 | -0.56 | -2.37 | -1.24 | 2.33 | -3.68 | -0.27 | 2.25 | 1.32 | 1.34 | 0.32 | -3.36 | -1.75 | -0.89 | -0.66 | -3.35 | 0.36 | -1.99 | 0.22 | -1.05 | 0.11 | -0.9 | -1.57 | -3.03 | -0.13 | -0.66 | 0.68 |
CCL20735 (BN171_960027) | -1.15 | 0.12 | -1.04 | 0.52 | -1.21 | -1.03 | 2.2 | -1.76 | -0.51 | 1.78 | 0.9 | 1.05 | -0.04 | -1.91 | -0.51 | -1.27 | -0.8 | -1.97 | 0.25 | -1.18 | 0.59 | 0.28 | -0.23 | -1.3 | -2.1 | -1.88 | -0.5 | -1.0 | 0.2 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.