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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | strain_5001420,control,fromUrine | strain_5001420,fromUrine | ch1034,13h_old_biofilm,biofilm_dispersed | ch1034,13h_old_biofilm,sessile | ch1034,7h_old_biofilm,sessile | ch1034,Log,planktonic | ch1034,Stationary,planktonic | control,fromNasalSwab,fromSwine | dmc1097 | dmc1097,control,fromBlood | dmc1097,fromBlood | ekp16,fromSputum | eugenol,fromNasalSwab,fromSwine | fromBlood | fromHospitalPatients | fromRectalSwab | fromUrine | je01 | k26,mero_susceptible,fromHospitalPatients | k56,mero_resistant,fromHospitalPatients | kctc2242 | kp4,FeLimited,fromRespiratoryTract | kpr1,+CTX | kpr1,+gent | kpr1,+mero | kpr1,+TMP/SMX | kpr1,control | kpr2,+CTX | kpr2,+gent | kpr2,+mero | kpr2,+TMP/SMX | kpr2,control | kps1,+CTX | kps1,+gent | kps1,+mero | kps1,+TMP/SMX | kps1,control | kps2,+CTX | kps2,+gent | kps2,+mero | kps2,+TMP/SMX | kps2,control | mrsn 1319 | ms6671 | njst258-1,FeLimited,fromUrine | njst258-1,fromUrine | rb011,+mero,mero_resistant | rb011,control,mero_resistant | rb012,+gent,gent_resistant | rb012,control,gent_resistant | rb013,+cip,cip_resistant | rb013,control,cip_resistant | rb039,+cip,cip_resistant | rb039,+mero,mero_susceptible | rb039,control,cip_resistant | rb039,control,mero_susceptible | rb040,+cip,cip_susceptible | rb040,+gent,gent_susceptible | rb040,control,cip_susceptible | rb040,control,gent_susceptible | rb041,+cip,cip_susceptible | rb041,control,cip_susceptible | rb121,+gent,gent_susceptible | rb121,+mero,mero_susceptible | rb121,control,gent_susceptible | rb121,control,mero_susceptible | rb122,+gent,gent_resistant | rb122,control,gent_resistant | rb257,+mero,mero_resistant | rb257,control,mero_resistant | uhkpc05,FeLimited,fromBlood | uhkpc05,fromBlood | uhkpc07 | uhkpc07,control,fromUrine | uhkpc07,fromUrine | uhkpc18 | uhkpc18,control,fromUrine | uhkpc18,fromUrine | uhkpc33 | uhkpc33,control,fromUrine | uhkpc33,fromUrine | uhkpc48 | uhkpc48,FeLimited,fromUrine | uhkpc67 | uhkpc67,control,fromBlood | uhkpc67,fromBlood | vakpc297 | vakpc297,FeLimited,fromUrine |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AGT25722 (N559_4096) | -0.48 | -0.54 | -0.47 | -0.18 | 0.17 | -1.13 | -0.34 | 0.16 | -0.28 | -0.12 | -0.07 | 0.23 | 1.56 | 1.15 | 0.49 | -1.35 | 1.06 | -3.85 | 0.42 | 0.8 | - | -0.76 | -0.4 | -0.33 | 0.94 | -0.47 | 0.04 | -0.01 | 0.14 | 0.22 | -0.47 | -0.2 | -0.02 | -1.0 | 0.04 | 0.91 | -0.44 | 0.24 | -1.02 | -0.12 | 1.22 | -0.36 | -0.45 | 0.15 | -1.09 | 0.58 | 0.89 | 0.86 | 0.14 | 0.13 | 0.07 | 0.04 | -0.07 | 0.47 | -0.04 | -0.05 | 0.13 | -1.11 | -0.41 | -0.35 | 0.48 | 0.01 | -1.0 | -0.14 | -0.21 | -0.58 | -0.33 | -0.31 | 0.19 | -0.15 | -0.27 | -0.68 | -0.45 | -0.15 | -0.18 | -0.44 | -0.09 | 0.09 | 0.46 | -0.18 | 0.1 | -0.12 | -1.03 | -0.08 | -0.07 | 0.2 | -0.1 | -1.23 |
AGT26476 (N559_4892) | -0.26 | 0.03 | -0.68 | 0.99 | 0.04 | -0.54 | 0.24 | -0.24 | -0.28 | -0.16 | 0.06 | -1.77 | -0.26 | 0.09 | -0.33 | 0.25 | 0.28 | -1.76 | 0.43 | 0.75 | -1.58 | -1.73 | -0.41 | 0.04 | 0.63 | -0.66 | -0.03 | -0.31 | 0.0 | 0.07 | -0.31 | -0.14 | 0.16 | -0.32 | -0.35 | 0.97 | -0.17 | 0.14 | -0.24 | -0.0 | 1.23 | 0.05 | -0.02 | 0.53 | -0.39 | 0.19 | 0.58 | 0.53 | 0.0 | 0.11 | -0.19 | -0.11 | -0.3 | 0.19 | -0.28 | -0.79 | -0.2 | -0.11 | -0.03 | 0.29 | -0.27 | -0.16 | -0.32 | 0.22 | 0.34 | -0.24 | 0.04 | -0.07 | -0.14 | -0.31 | -0.98 | -0.38 | 0.51 | -0.03 | 0.21 | 0.26 | -0.07 | 0.35 | 0.33 | -0.1 | 0.19 | 0.69 | -0.65 | 0.44 | -0.29 | 0.07 | -0.76 | -0.64 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.