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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | strain_5001420,control,fromUrine | strain_5001420,fromUrine | ch1034,13h_old_biofilm,biofilm_dispersed | ch1034,13h_old_biofilm,sessile | ch1034,7h_old_biofilm,sessile | ch1034,Log,planktonic | ch1034,Stationary,planktonic | control,fromNasalSwab,fromSwine | dmc1097 | dmc1097,control,fromBlood | dmc1097,fromBlood | ekp16,fromSputum | eugenol,fromNasalSwab,fromSwine | fromBlood | fromHospitalPatients | fromRectalSwab | fromUrine | je01 | k26,mero_susceptible,fromHospitalPatients | k56,mero_resistant,fromHospitalPatients | kctc2242 | kp4,FeLimited,fromRespiratoryTract | kpr1,+CTX | kpr1,+gent | kpr1,+mero | kpr1,+TMP/SMX | kpr1,control | kpr2,+CTX | kpr2,+gent | kpr2,+mero | kpr2,+TMP/SMX | kpr2,control | kps1,+CTX | kps1,+gent | kps1,+mero | kps1,+TMP/SMX | kps1,control | kps2,+CTX | kps2,+gent | kps2,+mero | kps2,+TMP/SMX | kps2,control | mrsn 1319 | ms6671 | njst258-1,FeLimited,fromUrine | njst258-1,fromUrine | rb011,+mero,mero_resistant | rb011,control,mero_resistant | rb012,+gent,gent_resistant | rb012,control,gent_resistant | rb013,+cip,cip_resistant | rb013,control,cip_resistant | rb039,+cip,cip_resistant | rb039,+mero,mero_susceptible | rb039,control,cip_resistant | rb039,control,mero_susceptible | rb040,+cip,cip_susceptible | rb040,+gent,gent_susceptible | rb040,control,cip_susceptible | rb040,control,gent_susceptible | rb041,+cip,cip_susceptible | rb041,control,cip_susceptible | rb121,+gent,gent_susceptible | rb121,+mero,mero_susceptible | rb121,control,gent_susceptible | rb121,control,mero_susceptible | rb122,+gent,gent_resistant | rb122,control,gent_resistant | rb257,+mero,mero_resistant | rb257,control,mero_resistant | uhkpc05,FeLimited,fromBlood | uhkpc05,fromBlood | uhkpc07 | uhkpc07,control,fromUrine | uhkpc07,fromUrine | uhkpc18 | uhkpc18,control,fromUrine | uhkpc18,fromUrine | uhkpc33 | uhkpc33,control,fromUrine | uhkpc33,fromUrine | uhkpc48 | uhkpc48,FeLimited,fromUrine | uhkpc67 | uhkpc67,control,fromBlood | uhkpc67,fromBlood | vakpc297 | vakpc297,FeLimited,fromUrine |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AGT24680 (N559_3017) | -2.12 | -1.87 | 1.53 | 2.49 | 2.9 | 1.17 | 0.74 | -1.84 | -2.19 | -1.28 | -1.29 | -0.94 | -1.46 | -2.69 | -0.77 | -3.56 | -2.27 | -2.55 | -1.94 | -2.05 | 0.87 | 1.57 | -0.78 | -0.94 | -1.26 | -2.28 | -1.04 | -1.15 | -1.42 | -1.35 | -1.34 | -1.18 | -1.52 | -1.59 | -1.5 | -2.31 | 0.69 | -1.14 | -1.8 | -1.14 | -1.92 | -0.37 | -1.67 | -0.59 | 3.1 | -2.65 | -1.2 | -1.27 | -1.42 | -1.35 | -1.62 | -1.8 | -1.55 | -1.65 | -1.58 | -2.31 | -0.21 | -1.52 | -0.2 | -0.46 | -1.15 | -1.82 | -1.59 | -1.32 | -1.61 | -1.32 | -0.94 | -1.07 | -1.2 | -1.17 | 2.58 | -1.59 | -1.39 | -1.37 | -1.03 | -1.73 | -1.98 | -1.37 | -1.79 | -1.74 | -1.46 | -1.41 | 2.97 | -0.17 | -1.76 | -1.32 | -1.16 | 3.29 |
AGT24681 (N559_3018) | -1.05 | -0.97 | 1.67 | 2.03 | 2.58 | 1.8 | 1.41 | -1.0 | -2.68 | -0.44 | -0.65 | -0.49 | 0.02 | -1.8 | 0.14 | -1.39 | -1.8 | -3.17 | -0.49 | -0.53 | 1.41 | 1.26 | -0.21 | -0.17 | -0.08 | -1.09 | -0.33 | -0.23 | -0.77 | -0.46 | -0.36 | -0.49 | -1.28 | -2.15 | -1.01 | -1.03 | 0.77 | -0.53 | -2.97 | -0.93 | -1.0 | -0.24 | 0.16 | -0.53 | 1.85 | -2.03 | -0.2 | -0.16 | -0.77 | -0.62 | -1.29 | -1.23 | -1.15 | -0.65 | -1.14 | -1.42 | -0.48 | -2.8 | -0.18 | -0.11 | -0.35 | -0.71 | -2.15 | -0.56 | -0.7 | -0.45 | -0.17 | -0.29 | -0.38 | -0.55 | 1.74 | -1.7 | -2.38 | -0.52 | -0.77 | -2.03 | -0.63 | -0.55 | -1.56 | -0.81 | -0.55 | -1.12 | 2.33 | -0.29 | -0.68 | -0.65 | -1.16 | 2.14 |
AGT24682 (N559_3019) | -1.22 | -1.13 | 0.97 | 1.27 | 2.05 | 0.22 | 0.99 | -1.08 | -0.74 | -0.49 | -0.55 | -0.56 | -0.19 | -1.48 | -0.64 | -1.91 | -0.99 | -3.66 | -0.63 | -0.4 | 0.53 | 2.01 | -0.44 | -0.69 | -0.29 | -1.52 | -0.6 | -0.4 | -1.21 | -0.59 | -0.75 | -0.79 | -1.03 | -2.1 | -1.08 | -0.94 | 1.22 | -0.57 | -3.15 | -1.14 | -1.6 | -0.72 | -0.97 | -0.73 | 2.37 | -1.67 | -0.34 | -0.18 | -1.21 | -1.18 | -1.13 | -1.18 | -1.01 | -0.43 | -1.11 | -1.44 | -0.67 | -3.04 | -0.15 | -0.51 | -0.39 | -0.94 | -2.1 | -0.54 | -1.09 | -0.63 | -0.69 | -0.85 | -0.2 | -0.65 | 1.99 | -0.22 | -0.05 | -0.78 | -0.73 | 0.25 | -0.91 | -0.71 | 0.65 | -0.9 | -0.69 | 0.38 | 2.75 | 1.06 | -0.99 | -0.85 | -0.46 | 2.54 |
AGT24683 (N559_3020) | -1.96 | -1.97 | 1.3 | 1.86 | 2.39 | 0.41 | 1.66 | 0.1 | -1.0 | -1.63 | -1.75 | -0.11 | 0.76 | -1.58 | -0.1 | -2.03 | -0.89 | -4.17 | -0.29 | 0.1 | 0.8 | 1.13 | 0.28 | 0.08 | 0.28 | -0.82 | -0.08 | 0.18 | -0.53 | 0.02 | -0.17 | -0.28 | -0.65 | -1.08 | -0.16 | -0.88 | 1.9 | 0.09 | -3.66 | -0.52 | -1.97 | -0.14 | -0.05 | 0.16 | 1.01 | -1.12 | 0.16 | 0.26 | -0.53 | -0.41 | -0.79 | -0.98 | -0.67 | -0.17 | -0.68 | -1.36 | -0.86 | -3.53 | 0.03 | 0.24 | -0.37 | -0.52 | -1.08 | -0.14 | -0.63 | 0.07 | 0.08 | -0.29 | 0.26 | -0.17 | 0.89 | -0.51 | -0.64 | -1.67 | -1.87 | -1.05 | -1.59 | -1.62 | 0.48 | -1.82 | -1.52 | -0.22 | 1.88 | 0.42 | -1.83 | -1.72 | 0.14 | 1.18 |
AGT26150 (N559_4547) | -2.04 | -2.16 | 1.56 | 1.62 | 1.31 | -1.84 | 0.13 | -0.21 | -1.32 | -1.14 | -1.21 | 0.21 | 1.44 | -0.53 | -0.27 | -2.35 | 0.32 | -3.57 | -0.7 | -0.76 | 2.78 | 0.72 | 0.6 | 0.42 | -0.46 | - | -0.23 | -0.51 | -0.79 | -0.61 | -0.08 | -0.44 | 0.87 | 1.08 | -8.45 | -0.32 | 1.97 | -0.05 | 0.99 | 0.81 | -0.84 | 0.03 | -0.33 | -0.35 | 0.85 | 0.36 | -0.08 | -0.51 | -0.79 | -0.91 | -0.72 | -1.1 | - | -1.44 | - | - | -1.73 | 0.95 | -0.8 | -0.54 | -1.53 | -0.62 | 1.08 | 0.85 | 0.62 | 0.38 | 0.42 | 0.37 | -0.93 | -1.26 | 0.19 | -1.18 | -0.77 | -2.05 | -1.84 | -0.71 | -1.79 | -1.3 | -0.93 | -1.71 | -1.55 | -0.5 | 1.53 | -0.7 | -1.3 | -1.4 | -0.55 | 0.41 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.