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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | BHI | Basal Medium | CD196,BHI | CD196,Basal Medium | CD196,Log,BHI | ClnR mutant | LB-CD16 | Log,BHI | LuxS KO | ND-CD12 | ND-CD13 | ND-CD17 | R20291 | R20291,BHI | R20291,Basal Medium | R20291,Heme+ | R20291,Log | R20291,Log,BHI | Strain 630 | Strain 630,BHI | Strain 630,Basal Medium | Strain 630,Faecal water+ | Strain 630,HPUra+ | Strain 630,Lag | Strain 630,Log | Strain 630,Log,BHI | Strain 630,Sporulating | TW11 | UK1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CCL16953 (spoIVB) | -3.54 | -4.5 | -3.19 | -3.15 | -3.59 | -4.13 | 1.7 | -5.09 | 0.56 | 1.3 | 1.06 | 1.1 | 0.98 | -4.78 | -4.54 | -2.95 | -0.59 | -3.33 | 1.89 | -5.61 | -4.43 | -2.19 | 1.32 | 0.7 | -2.78 | -6.43 | 1.87 | -0.73 | 0.66 |
CCL16954 (BN171_1030004) | -0.94 | -1.26 | -0.42 | -0.49 | -0.87 | -1.91 | 1.5 | -1.26 | 0.57 | -0.62 | 0.21 | 0.51 | 0.82 | -1.39 | -1.47 | -0.93 | -0.28 | -0.91 | 1.78 | -1.23 | -1.71 | 0.92 | 1.13 | 0.04 | -1.35 | -2.6 | 0.51 | -0.53 | 0.57 |
CCL17792 (BN171_1800015) | -3.34 | 0.72 | -2.92 | 0.41 | -3.17 | -2.7 | 1.21 | -2.4 | 2.18 | 1.27 | 0.67 | 0.37 | 0.39 | -3.36 | 0.38 | -0.14 | -1.24 | -2.26 | 1.09 | -2.75 | 0.91 | 0.78 | -2.7 | -1.24 | -1.61 | -3.78 | -0.68 | - | 0.55 |
CCL17793 (BN171_1800016) | -3.05 | 1.26 | -2.37 | 0.91 | -2.88 | -1.01 | 1.0 | -1.72 | 1.9 | 0.99 | 0.7 | 0.62 | -0.46 | -2.89 | 0.57 | -0.61 | -0.63 | -2.19 | 1.04 | -2.35 | 1.02 | 0.65 | -1.58 | -1.4 | -1.68 | -2.43 | -0.45 | -6.22 | -0.1 |
CCL17874 (BN171_1920001) | -2.61 | -2.84 | -1.34 | 0.31 | -0.71 | -0.95 | 1.06 | -4.05 | 0.33 | 1.07 | 0.9 | 0.22 | 1.17 | -3.3 | -2.76 | 1.02 | 1.33 | -1.78 | 1.58 | -1.41 | -0.79 | -3.37 | 0.49 | 0.59 | 0.28 | -1.51 | -1.47 | -3.02 | 0.06 |
CCL17875 (BN171_1920002) | -1.07 | -0.75 | -0.33 | 1.03 | 0.3 | -0.67 | 0.86 | -1.6 | -0.2 | 0.05 | 0.34 | 0.19 | 0.31 | -1.07 | -0.58 | -0.11 | 0.95 | -0.84 | 1.03 | -0.07 | 0.13 | 0.32 | -0.02 | -0.42 | -0.75 | -0.71 | -1.48 | -0.18 | 0.53 |
CCL17876 (BN171_1920003) | -2.42 | -3.97 | -0.77 | -0.2 | -0.76 | -0.6 | 1.16 | -4.26 | 0.08 | 1.78 | 0.98 | 0.95 | 1.16 | -2.75 | -2.53 | 0.23 | 0.9 | -2.45 | 0.92 | -1.81 | -0.84 | -3.14 | 0.15 | -0.49 | -0.71 | -2.67 | 0.45 | 0.11 | 0.77 |
CCL18291 (BN171_220043) | -0.11 | -0.07 | -0.04 | 0.38 | -0.8 | -0.65 | 0.25 | -0.61 | 0.43 | 0.48 | 0.7 | 0.35 | 0.3 | 0.11 | 0.03 | -0.38 | -0.21 | -0.31 | 0.92 | -0.06 | -0.08 | -1.55 | 0.38 | -0.71 | -0.86 | -1.62 | -1.63 | 0.97 | 0.23 |
CCL18459 (BN171_2360001) | - | - | - | - | - | - | - | - | - | - | - | - | -0.23 | 0.23 | - | - | 1.31 | - | - | - | - | - | - | -0.27 | 1.42 | - | 3.3 | 3.48 | - |
CCL18504 (rbsR) | -1.75 | -1.83 | -0.28 | 0.38 | -0.68 | -1.64 | 0.32 | -1.32 | 2.08 | 0.06 | 0.48 | 0.29 | -0.05 | -0.89 | -0.43 | -0.72 | 0.51 | -0.54 | 0.82 | -1.04 | -0.41 | 0.2 | -1.4 | -1.93 | -1.55 | -1.5 | 0.11 | 1.61 | 0.29 |
CCL18505 (rbsK) | -2.37 | -2.45 | -0.63 | -0.31 | -0.54 | 0.28 | 0.01 | -1.96 | 0.53 | 0.81 | 0.77 | 1.05 | -0.64 | -1.94 | -0.73 | -0.42 | -0.08 | -0.98 | 1.66 | -0.95 | -1.17 | 1.49 | -1.3 | -1.77 | -1.41 | -1.29 | -0.02 | 1.23 | 0.64 |
CCL18506 (rbsB) | -3.09 | -1.81 | -2.16 | -1.8 | -2.47 | -1.24 | 1.61 | -2.83 | -0.03 | 1.27 | 0.71 | 1.17 | -0.48 | -3.09 | -1.04 | -0.97 | -0.67 | -1.26 | 1.41 | -1.75 | -1.03 | 2.11 | -1.87 | -2.02 | -2.05 | -2.49 | 0.96 | 0.94 | 0.65 |
CCL18507 (rbsA) | -4.79 | -2.3 | -3.51 | -2.29 | -4.53 | -3.17 | 1.99 | -4.78 | -1.45 | 1.78 | 0.87 | 1.3 | -0.31 | -3.73 | -1.47 | -1.01 | -0.62 | -2.27 | 1.54 | -3.88 | -1.23 | 1.82 | -3.01 | -3.16 | -2.73 | -4.04 | 1.33 | 0.92 | 0.87 |
CCL18508 (rbsC) | -3.23 | -0.88 | -2.67 | -1.18 | -2.45 | -4.35 | 1.55 | -2.27 | -1.69 | 1.29 | 0.42 | 1.02 | -0.63 | -3.54 | -0.19 | -0.86 | -0.89 | -1.17 | 1.38 | -3.65 | -0.66 | 2.61 | -1.18 | -2.94 | -3.34 | -3.11 | 0.84 | 0.94 | 0.31 |
CCL18509 (argE) | -3.55 | -1.51 | -3.13 | -1.22 | -2.64 | -3.42 | 1.89 | -3.19 | -2.41 | 1.39 | 0.73 | 1.07 | -0.56 | -3.88 | -0.89 | -1.08 | -0.5 | -1.9 | 1.4 | -3.72 | -0.7 | 2.33 | -1.22 | -2.9 | -3.38 | -3.77 | 1.23 | 1.2 | -0.1 |
CCL18510 (BN171_240015) | -2.22 | -0.7 | -2.15 | -0.66 | -1.65 | -2.6 | 1.14 | -1.68 | -2.24 | 0.67 | 0.35 | 0.86 | -0.71 | -3.03 | -0.63 | -0.68 | -0.07 | -1.14 | 1.14 | -2.21 | -0.48 | 2.41 | -0.57 | -2.34 | -2.37 | -2.45 | 1.48 | 1.45 | -0.35 |
CCL18511 (BN171_240016) | -1.49 | -0.97 | -1.43 | 0.04 | -0.98 | -1.7 | 1.37 | -1.79 | -1.63 | 0.52 | 0.14 | 0.44 | 0.05 | -1.85 | -0.6 | 0.26 | -0.42 | -1.32 | 1.12 | -1.04 | -0.53 | 1.74 | 0.18 | -0.73 | -0.07 | -1.44 | 0.81 | 0.87 | 0.24 |
CCL18787 (buk) | -2.44 | 0.42 | -2.68 | 1.11 | -2.96 | -1.41 | 1.59 | -2.6 | -0.15 | 0.33 | 0.44 | 0.35 | 0.93 | -2.99 | -0.64 | -1.16 | 0.74 | -2.06 | 1.03 | -2.15 | 2.0 | -0.45 | 0.03 | -1.99 | -2.37 | -2.75 | 0.23 | -0.6 | 0.3 |
CCL18788 (iorB) | -5.22 | -0.52 | -5.26 | 1.03 | -5.75 | -2.98 | 1.62 | -5.46 | 0.06 | 0.57 | 0.49 | 0.35 | 1.61 | -4.88 | -1.09 | -1.87 | 1.02 | -3.18 | 1.29 | -4.77 | 2.02 | -1.66 | 0.36 | -2.94 | -4.77 | -5.63 | 0.37 | -0.41 | 0.49 |
CCL18789 (iorA) | -5.76 | -0.83 | -5.43 | 0.87 | -5.85 | -3.84 | 1.66 | -5.86 | 0.02 | 0.64 | 0.56 | 0.42 | 1.52 | -4.89 | -1.25 | -1.57 | 0.9 | -3.37 | 1.56 | -4.79 | 1.91 | -0.67 | 0.33 | -3.12 | -4.51 | -5.9 | 0.61 | -0.59 | 0.4 |
CCL18790 (BN171_2620013) | -5.57 | -0.97 | -5.19 | 0.6 | -5.9 | -2.63 | 1.78 | -5.46 | -0.16 | 0.82 | 0.71 | 0.66 | 1.4 | -4.76 | -1.52 | -1.4 | 0.75 | -3.49 | 1.7 | -4.47 | 1.48 | -1.3 | 0.84 | -2.53 | -3.94 | -5.61 | 0.62 | -0.51 | 0.54 |
CCL19060 (BN171_2840008) | -0.08 | -1.45 | -0.4 | 0.33 | 0.1 | -2.29 | 0.98 | 0.07 | -0.9 | -1.93 | -1.08 | -2.08 | 1.09 | -0.34 | -1.23 | -0.34 | -0.38 | 0.11 | 0.34 | -0.79 | 0.03 | -0.96 | 1.56 | -2.23 | -2.08 | -1.35 | 2.29 | 0.79 | -3.08 |
CCL19061 (BN171_2840009) | - | -5.07 | -4.22 | -3.96 | -2.97 | -2.55 | - | - | -3.0 | - | - | - | -0.44 | -2.79 | -4.8 | -1.81 | -1.44 | - | 0.97 | 0.11 | 0.43 | -0.09 | 2.58 | -2.02 | -1.98 | -0.26 | 3.18 | 2.37 | - |
CCL19086 (BN171_2870016) | -2.65 | 1.3 | -3.07 | 0.98 | -3.11 | -4.81 | 1.88 | -4.05 | -0.95 | 1.39 | 0.39 | -0.06 | 0.24 | -2.98 | 1.73 | -2.58 | -2.23 | -2.2 | 1.0 | -3.01 | 2.09 | -2.4 | -2.8 | -2.04 | -1.24 | -3.77 | -0.66 | 0.08 | -0.64 |
CCL19138 (thlA) | -1.66 | 0.98 | -1.42 | 1.75 | -1.44 | -4.56 | 1.49 | -2.35 | 1.77 | -0.39 | -2.36 | -2.09 | 0.06 | -3.53 | -0.56 | 0.32 | -1.6 | -2.05 | -0.23 | -3.35 | 0.49 | -1.52 | -1.03 | -0.31 | -2.28 | -3.06 | 2.52 | 0.33 | - |
CCL19139 (scoA) | -1.37 | 0.83 | -1.88 | 1.52 | - | -3.07 | 1.51 | - | 1.15 | -0.26 | -1.79 | 0.62 | 0.16 | -4.67 | -1.18 | 0.84 | -1.14 | - | 0.07 | -3.23 | 0.09 | -1.95 | -1.41 | -0.96 | -3.07 | - | 2.42 | 1.53 | -1.84 |
CCL19140 (scoB) | -2.69 | 0.37 | -3.12 | 1.18 | -1.8 | - | 1.33 | -4.91 | 1.04 | 0.79 | -1.03 | 1.07 | 0.52 | -4.97 | -0.43 | 0.69 | -1.68 | -1.95 | 0.02 | -2.97 | 0.3 | -0.66 | -2.61 | -1.7 | -3.75 | -4.81 | 2.28 | 1.29 | -0.56 |
CCL19141 (bdhA) | -1.51 | 0.65 | -1.67 | 0.82 | -1.13 | -3.0 | 1.45 | -1.9 | 0.63 | 0.35 | 0.11 | -0.34 | 0.05 | -1.76 | 0.11 | 0.33 | -0.39 | -1.04 | -0.43 | -1.48 | 0.47 | 0.72 | -0.22 | -0.37 | -1.22 | -2.01 | 1.14 | 1.35 | -0.68 |
CCL19447 (BN171_3150010) | -3.73 | -1.88 | -5.87 | -3.81 | -5.37 | -1.3 | 2.87 | -2.09 | -5.45 | 1.71 | 1.53 | 0.53 | -4.26 | -1.82 | -1.81 | -5.28 | 0.42 | -1.08 | 1.42 | -2.82 | 1.81 | -5.91 | -1.53 | -3.27 | -4.27 | -2.93 | -1.61 | -0.07 | 1.18 |
CCL19448 (BN171_3150011) | -3.15 | -0.88 | -5.71 | -3.57 | -5.4 | -1.81 | 2.87 | -0.96 | -4.64 | 1.44 | 1.17 | 0.13 | -4.13 | -1.8 | -1.03 | -5.09 | 0.07 | -0.14 | 1.77 | -2.7 | 2.0 | -3.92 | -1.35 | -3.03 | -4.0 | -2.51 | -1.05 | -0.37 | 0.65 |
CCL19449 (BN171_3150012) | -2.59 | -0.03 | -5.61 | -3.06 | -4.78 | -2.05 | 2.73 | -0.11 | -4.43 | 0.58 | 0.55 | -0.38 | -4.77 | -1.45 | -0.61 | -5.63 | -0.12 | 0.6 | 1.83 | -1.68 | 2.52 | -3.74 | -1.73 | -4.01 | -4.84 | -1.55 | -1.36 | -1.01 | 0.38 |
CCL19450 (BN171_3150013) | -2.77 | -1.09 | -5.17 | -3.23 | -4.97 | -0.59 | 3.04 | -1.22 | -4.5 | 1.52 | 1.09 | -0.04 | -4.27 | -1.46 | -1.17 | -4.93 | -0.15 | 0.25 | 1.94 | -2.86 | 1.4 | -5.69 | -1.05 | -3.82 | -4.49 | -2.94 | -0.7 | -0.88 | 0.46 |
CCL19451 (BN171_3150014) | -4.38 | -3.12 | -6.33 | -4.4 | -6.19 | -2.04 | 3.38 | -3.25 | -4.85 | 1.55 | 1.37 | 0.24 | -4.42 | -2.07 | -2.98 | -5.64 | -0.52 | -1.49 | 1.67 | -3.06 | 1.3 | -6.46 | -1.32 | -4.02 | -4.6 | -3.87 | -0.01 | -0.8 | 0.88 |
CCL19498 (xylA) | -0.23 | -0.55 | 0.34 | 0.74 | -0.12 | -1.31 | 0.21 | -1.05 | -1.47 | 0.69 | 0.64 | 0.38 | 0.15 | 0.61 | 0.34 | -0.14 | -0.21 | -0.43 | 0.89 | -0.19 | -0.84 | -0.46 | -0.53 | -0.61 | -1.16 | -1.24 | 0.38 | 0.32 | 0.61 |
CCL19499 (xylB) | -0.3 | -1.17 | -0.0 | -0.01 | -0.52 | -0.72 | -0.37 | -1.31 | -1.48 | 0.68 | 0.63 | 0.3 | 0.43 | 0.15 | 0.16 | 0.27 | -0.07 | -0.69 | 1.61 | -1.0 | -1.17 | -0.08 | -0.05 | -0.86 | -1.52 | -1.45 | -0.69 | 1.21 | 1.04 |
CCL19545 (BN171_3250005) | -2.69 | 0.8 | -2.23 | 0.81 | -2.23 | -2.39 | 0.66 | -2.55 | 0.92 | 0.36 | -0.37 | -1.85 | -0.1 | -2.58 | 0.31 | 0.24 | -0.93 | -2.38 | 0.17 | -2.16 | 1.13 | 0.83 | -1.78 | -1.01 | -1.94 | -2.47 | 2.1 | 1.7 | -1.14 |
CCL19546 (BN171_3250006) | -1.11 | -0.56 | -0.61 | -0.08 | -0.73 | 0.26 | 1.22 | -1.78 | 1.7 | 0.43 | 0.35 | -0.98 | 0.74 | -1.05 | -0.31 | 0.75 | -0.64 | -1.6 | 0.35 | -0.32 | 0.34 | -0.94 | -0.18 | -0.45 | -1.11 | -1.12 | 1.1 | -0.11 | -1.42 |
CCL19563 (BN171_3270001) | -2.41 | -1.28 | -1.59 | -0.92 | -2.32 | -2.01 | 1.91 | -1.22 | 0.14 | 2.14 | 1.31 | 0.51 | 0.7 | -1.59 | -1.17 | -0.4 | -1.39 | -1.02 | 0.22 | -2.15 | -2.1 | -2.44 | -0.24 | -0.43 | -1.33 | -2.38 | 0.88 | -0.03 | 1.42 |
CCL19579 (BN171_3270017) | -2.37 | -0.46 | -2.92 | -0.18 | -3.48 | -0.64 | 1.68 | -3.13 | -0.81 | 1.5 | 1.37 | 0.97 | 0.62 | -2.44 | -0.51 | 0.08 | -0.76 | -2.61 | 0.56 | -2.4 | 0.9 | -0.84 | -0.53 | -2.1 | -1.93 | -3.47 | 0.47 | 1.25 | 0.78 |
CCL19580 (BN171_3270018) | -1.98 | -0.48 | -1.63 | 1.11 | -0.86 | -2.63 | 1.01 | -1.37 | -1.78 | 0.01 | -0.26 | 0.1 | 0.33 | -2.23 | 1.52 | -0.19 | -1.07 | -1.04 | 0.82 | -2.35 | 1.09 | 1.01 | 0.36 | -1.51 | -2.09 | -2.6 | 1.16 | 1.03 | -0.59 |
CCL19581 (BN171_3270019) | -2.59 | -0.29 | -1.11 | 1.7 | -0.55 | -3.55 | 0.7 | -1.29 | -2.98 | -1.05 | -0.68 | 0.0 | 0.29 | -1.97 | 2.1 | -0.08 | -1.69 | -0.68 | 0.33 | -2.09 | 1.54 | 0.84 | -1.24 | -1.24 | -2.43 | -3.27 | 1.12 | 0.67 | -0.96 |
CCL19628 (BN171_3320002) | -3.16 | -0.6 | -2.44 | 0.3 | -2.91 | -2.02 | 2.2 | -5.55 | -0.18 | 1.61 | 1.21 | 1.24 | 0.45 | -3.26 | -0.37 | -1.14 | -0.78 | -2.51 | 0.79 | -3.34 | 0.21 | -0.95 | -0.74 | -2.37 | -1.86 | -4.18 | 0.22 | 1.29 | 0.6 |
CCL19629 (BN171_3320003) | -0.18 | 0.4 | 0.25 | 1.16 | -0.76 | -2.23 | 1.07 | -2.59 | -0.17 | 0.37 | 0.37 | 0.45 | -0.26 | 0.15 | 0.35 | -1.14 | -1.01 | -1.03 | 0.67 | -0.07 | 1.11 | -2.5 | -0.12 | -2.35 | -1.07 | -1.07 | -0.46 | 1.37 | -0.88 |
CCL19848 (BN171_3550001) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.0 | 0.5 | - | 3.11 | 4.08 | - |
CCL20201 (BN171_3790001) | - | - | - | - | - | -2.26 | - | - | - | - | - | - | - | - | - | - | - | - | -0.23 | - | - | 2.65 | -0.3 | 1.55 | -1.07 | - | 3.12 | 3.13 | - |
CCL20252 (BN171_390006) | -0.77 | 0.08 | -0.84 | 0.24 | -2.32 | -2.02 | 1.6 | -2.66 | -0.56 | 0.77 | 0.36 | 0.33 | -0.43 | -1.28 | 0.41 | -0.71 | -0.93 | -1.33 | 1.0 | -0.82 | 0.94 | -1.83 | -0.52 | -0.34 | -0.5 | -2.72 | 1.49 | 1.04 | 0.09 |
CCL20329 (BN171_4180004) | -0.85 | -1.7 | - | - | - | 0.68 | - | - | 1.88 | 2.15 | - | - | 1.89 | - | - | - | 0.14 | - | 2.53 | -0.59 | - | - | 0.63 | 0.42 | 1.07 | - | 1.14 | - | - |
CCL20339 (BN171_4200001) | - | - | - | - | - | -3.32 | - | - | - | - | - | - | - | - | - | - | - | - | 0.15 | 0.78 | 1.61 | - | 0.62 | 2.4 | 0.19 | 0.3 | 3.12 | 2.36 | - |
CCL20686 (BN171_900006) | -0.98 | -0.69 | -0.38 | -0.15 | -0.54 | 0.38 | 1.76 | -1.33 | -0.3 | 0.62 | 0.23 | 0.3 | 0.47 | -0.98 | -0.35 | 0.07 | -1.52 | -0.76 | 0.36 | -0.32 | -0.38 | 1.32 | -0.3 | -0.9 | -0.96 | -1.17 | 0.42 | 0.56 | -0.84 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.