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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | AES-1R,ASMDM+ | AG1,ciproflaxin | D+7bld | DK2 | E01 | LB | LB,log | LB,untreated | PA1201 | PA14 | PA14,0.25xMIC G3KL | PA14,0.25xMIC T7 | PA14,0.25xMIC polymyxin-B | PA14,LB | PA14,LB,log | PA14,WT | PA14,ciproflaxin | PA14,cmrA+ | PA14,late stat,NaPyruvate+Arabinose | PA14,late stat,untreated | PA14,sutA-KO,late stat,NaPyruvate+Arabinose | PA14,untreated | PA212 | PA2596 | PA558 | PA580 | PAK,LB | PAK,WT | PAK,WT,LB | PAK,pilR | PAK,pmrB6,LB | PAO1 | PAO1,0.56mg/mL farnesol | PAO1,ABTGC | PAO1,DDS | PAO1,GUN,LB,glucose | PAO1,HapZ,early stat | PAO1,LB | PAO1,LB,glucose | PAO1,LB,untreated | PAO1,M9-CA,early stat | PAO1,M9-CA,log | PAO1,RsmN+ | PAO1,SagS,early stat | PAO1,WT | PAO1,WT,BHI | PAO1,WT,LB | PAO1,WT,MOPS acetate | PAO1,WT,MOPS glycerol | PAO1,early stat | PAO1,ersA,BHI | PAO1,lasR rhlR,M9-CA,early stat | PAO1,lasR rhlR,M9-CA,log | PAO1,liquid culture | PAO1,mexZ,LB | PAO1,oxylipin- | PAO1,pBAD-yhjH | PAO1,pUCP18::msr(E) | PAO1,qslA,M9-CA,early stat | PAO1,qslA,M9-CA,log | PAO1,qteE,M9-CA,early stat | PAO1,qteE,M9-CA,log | PAO1,untreated | PAO1,wspFpelApslBCD,LB | PAO1,wspFpelApslBCD,LB,untreated | Y31,LB | Y71,LB | Y82,LB | Y89,LB | ciproflaxin | liquid culture | m pheno | mexT | nirS | pHerdB20T-gp68 | untreated |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CRN79419 (pqiA_1) | 0.53 | -0.13 | 0.7 | -0.58 | 1.6 | 1.13 | -0.46 | -1.13 | -1.16 | 0.64 | 1.12 | 1.19 | 1.14 | 0.84 | 0.23 | 0.05 | 0.35 | 0.28 | 0.17 | 0.99 | 0.82 | 0.98 | -0.55 | 0.18 | -0.14 | 0.42 | 0.17 | -0.03 | -0.26 | 0.19 | 0.41 | -0.28 | -0.16 | -1.85 | -0.44 | -1.95 | -1.31 | -0.46 | -1.49 | -1.01 | -0.3 | -0.69 | -1.8 | -1.27 | -0.42 | -0.8 | -0.34 | -2.57 | -2.47 | -1.22 | -0.56 | -0.28 | -0.67 | -0.88 | -0.81 | -3.11 | -1.04 | -0.33 | -0.8 | -0.59 | -0.64 | -0.76 | -0.54 | -1.45 | -1.69 | 0.41 | 1.53 | 0.79 | 0.71 | 0.59 | -1.61 | -0.15 | 0.51 | 0.01 | 0.85 | -1.1 |
| - | 0.99 | 1.17 | - | 3.65 | 1.44 | - | - | - | - | - | - | - | -6.06 | - | - | - | - | - | - | - | - | 0.88 | 0.6 | - | 0.81 | 0.15 | 0.8 | -0.04 | 1.41 | 0.68 | -0.48 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.38 | 2.39 | 1.24 | 1.68 | 0.29 | - | 1.17 | - | 1.43 | 2.25 | - | |
| - | 0.27 | 0.19 | - | 3.99 | 1.43 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.02 | 1.42 | - | 0.41 | 0.14 | 0.92 | -0.52 | 1.18 | 0.66 | -0.82 | - | - | - | - | - | -11.51 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.49 | 1.89 | 0.75 | 1.08 | -0.61 | - | 1.82 | - | 1.22 | 2.43 | - | |
| - | 3.66 | 0.6 | - | 2.51 | 1.52 | - | - | - | - | - | - | - | -6.34 | - | - | - | - | - | - | -7.55 | - | -0.15 | 2.46 | - | 0.08 | 0.1 | 0.2 | -0.12 | 0.61 | 0.56 | -0.43 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.75 | 1.21 | 0.34 | 0.58 | 0.5 | - | 4.3 | - | 0.48 | 2.19 | - | |
| - | 1.75 | 1.38 | - | 2.17 | 2.67 | - | - | - | - | - | - | - | -7.21 | - | - | - | - | - | - | - | - | 0.47 | 1.43 | - | 0.76 | 1.32 | 2.04 | 1.6 | 1.31 | 1.78 | -1.55 | - | - | - | - | - | -13.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.52 | 2.48 | 1.97 | 2.18 | 2.33 | - | 2.12 | - | 1.66 | 2.38 | - | |
| - | 2.28 | 2.12 | - | 2.73 | 1.88 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.5 | 0.49 | - | -1.08 | 1.39 | 2.25 | 2.06 | 1.68 | 1.75 | -1.42 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.92 | 2.18 | 3.0 | 1.81 | 1.57 | - | 0.58 | - | 0.23 | 2.04 | - | |
CRP41187 (prpR_2) | -0.93 | 0.45 | 0.67 | - | 1.47 | 1.2 | - | - | - | 0.94 | 1.94 | 2.17 | 2.21 | 0.84 | 0.34 | 2.16 | 1.21 | 0.35 | 0.46 | 1.08 | 0.4 | 2.05 | -1.09 | 0.75 | -5.91 | -0.18 | 0.18 | 0.95 | 0.68 | 1.33 | 0.68 | -2.53 | - | - | - | - | - | -13.54 | - | - | - | - | - | - | - | - | -3.71 | - | - | - | - | - | - | - | -6.81 | - | - | - | -10.51 | - | - | - | - | -9.4 | -11.23 | 1.53 | 1.58 | 1.27 | 1.75 | 0.47 | -2.34 | 0.94 | 0.36 | 0.81 | 1.12 | -11.9 |
| - | -0.85 | -0.55 | - | 4.16 | -0.26 | - | - | - | -0.14 | -0.7 | -0.12 | -0.0 | 0.81 | -1.26 | -0.65 | -1.4 | -2.48 | -0.08 | 1.13 | 0.34 | -0.21 | 1.14 | -1.02 | - | 0.27 | 1.66 | 2.7 | -1.56 | 3.51 | 0.46 | -0.48 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.2 | 1.3 | 0.21 | -0.31 | -0.24 | -4.9 | -0.47 | -2.56 | -1.03 | 3.18 | - | |
| - | -2.08 | -1.61 | - | 4.48 | 0.32 | - | - | - | 0.1 | -0.57 | -0.12 | -0.09 | 1.27 | -1.1 | -0.6 | -0.32 | -3.0 | 0.54 | 0.91 | 1.4 | -0.34 | 0.51 | -1.24 | - | 0.04 | 1.23 | 2.56 | -0.9 | 2.72 | -0.38 | 0.37 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -1.08 | 0.76 | -0.14 | -0.1 | -1.31 | -5.34 | -1.1 | -3.14 | -0.82 | 3.47 | - | |
CRP41267 (acdA_6) | - | -0.33 | -0.47 | - | 4.56 | -0.23 | - | - | - | -0.08 | 0.18 | 0.49 | 0.47 | 0.57 | -1.28 | 0.21 | -1.65 | -1.87 | -0.2 | 0.47 | 0.05 | 0.11 | -0.05 | -0.62 | - | -0.42 | 1.34 | 2.43 | -1.74 | 3.08 | -0.18 | -1.2 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -4.64 | - | - | - | - | - | - | - | -5.15 | - | - | - | - | - | - | - | - | - | - | 0.27 | 1.35 | 0.25 | 0.19 | -0.98 | -4.84 | 0.04 | -2.02 | -0.43 | 3.02 | - |
CRP41300 (gno) | - | -0.68 | -0.84 | - | 4.88 | -0.45 | - | - | - | -0.07 | -0.27 | -0.04 | 0.29 | -0.04 | -1.71 | 0.07 | -1.25 | -2.43 | -0.18 | 0.16 | 0.48 | -0.22 | 0.24 | -1.05 | - | 0.02 | 1.0 | 2.11 | -0.53 | 2.15 | -0.67 | -0.84 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.08 | 1.05 | -0.27 | -0.28 | -1.09 | -5.05 | 0.13 | -2.46 | -0.4 | 3.44 | - |
| - | -0.31 | -0.36 | - | 3.52 | 0.27 | - | - | - | 0.74 | 0.58 | 0.71 | 0.77 | 1.43 | -0.55 | 0.74 | -0.97 | -1.61 | 1.44 | 2.86 | 1.73 | 0.49 | 0.03 | 0.49 | - | -0.1 | 1.0 | 2.32 | -0.61 | 2.57 | -0.18 | -0.89 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -3.21 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.32 | 1.34 | -0.13 | 0.02 | -0.18 | -4.09 | 0.09 | -1.56 | 0.73 | 2.7 | - | |
CRP41362 (yjcH_2) | - | -0.54 | 0.02 | - | 3.18 | -1.59 | - | - | - | 1.34 | 1.17 | 1.47 | 1.2 | 1.58 | 0.17 | 1.35 | -1.96 | -0.87 | 2.03 | 3.85 | 2.27 | 1.13 | 0.15 | 2.06 | - | -0.89 | -0.3 | 1.41 | -1.04 | 1.91 | -0.56 | -0.87 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -0.25 | 0.92 | -0.41 | -0.61 | -1.73 | -3.7 | -1.12 | -0.77 | -0.84 | 0.31 | - |
CRP41395 (actP_2) | - | -0.21 | 0.38 | - | 0.97 | -0.23 | - | - | - | 0.64 | 0.52 | 0.43 | 0.45 | 1.56 | -0.57 | 1.44 | -1.89 | -1.52 | 2.64 | 4.25 | 2.65 | 0.18 | 1.15 | 1.55 | - | -0.78 | -0.3 | 1.5 | -1.2 | 2.24 | -0.6 | -1.49 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -5.99 | -9.39 | - | - | - | - | - | - | -6.5 | - | - | - | - | - | - | - | - | - | - | 0.58 | 0.96 | 0.19 | -0.03 | -0.63 | -4.31 | -0.43 | -1.16 | -0.58 | 1.02 | -10.23 |
CRP41453 (glxR_1) | - | 0.13 | 0.24 | - | 3.87 | -0.01 | - | - | - | 0.84 | 1.04 | 0.83 | 1.1 | 0.55 | -1.44 | 1.98 | -0.2 | -0.07 | 1.7 | 1.28 | 2.36 | 0.82 | 0.68 | 0.96 | - | 0.31 | -0.46 | 0.68 | -0.78 | 0.27 | -0.2 | -1.15 | - | - | - | - | - | -11.73 | - | - | - | - | - | - | - | - | -4.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.26 | 1.52 | 0.31 | 0.31 | 0.38 | -3.76 | 1.56 | -0.14 | 0.35 | 2.5 | - |
CRP41486 (ectB) | - | -0.66 | 0.13 | - | 2.85 | 1.5 | - | - | - | 1.19 | 1.33 | 1.15 | 1.43 | 1.5 | -0.19 | 2.86 | 1.59 | 0.09 | 1.84 | 0.54 | 2.31 | 1.44 | -0.85 | 1.88 | -7.7 | -0.94 | -1.06 | -0.09 | -0.82 | 0.25 | -0.49 | -1.59 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -5.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -7.94 | - | 1.86 | 0.89 | -0.2 | -0.04 | -0.84 | -3.32 | 2.0 | 0.11 | 0.07 | 1.86 | - |
CRP41515 (prr) | - | -0.41 | 0.07 | - | 2.95 | 1.45 | - | - | - | 1.34 | 1.53 | 1.36 | 1.57 | 2.35 | 0.31 | 2.49 | 0.42 | -0.1 | 1.79 | 1.97 | 2.23 | 1.24 | -0.31 | 1.42 | - | -0.55 | -0.93 | 0.1 | -0.99 | 0.73 | -0.52 | -1.05 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -4.42 | - | - | - | - | - | - | - | -4.93 | - | - | - | - | - | - | - | - | -8.04 | -9.35 | 0.96 | 0.69 | -0.22 | -0.37 | -0.91 | -3.58 | 1.82 | -0.02 | -0.31 | 1.94 | - |
CRP41546 (puuP_3) | - | 0.34 | 1.01 | - | 2.9 | 1.35 | - | - | - | 1.17 | 1.52 | 1.44 | 1.18 | 2.15 | 0.3 | 1.46 | 0.41 | -0.39 | 1.83 | 2.33 | 2.21 | 1.12 | 0.46 | 1.05 | - | -0.68 | -0.75 | 1.36 | -0.95 | 1.59 | -0.19 | -1.25 | - | - | - | - | - | -12.53 | - | - | - | - | - | - | - | - | -3.89 | - | - | - | - | - | - | - | -4.4 | - | - | - | - | - | - | - | - | -8.09 | - | 1.03 | 0.86 | 0.09 | 0.28 | 0.04 | -3.06 | 0.59 | -0.21 | 0.69 | 1.73 | - |
CRP41568 (dhaT_2) | - | 0.38 | 1.51 | - | 3.85 | 2.17 | - | - | - | - | - | - | - | -4.98 | - | - | - | - | - | - | - | - | 1.55 | 1.47 | - | 1.34 | 0.76 | 1.52 | -0.39 | 2.08 | 1.3 | 0.58 | - | - | - | - | - | -10.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.15 | 2.37 | 1.33 | 1.59 | 1.16 | - | 2.54 | - | 1.1 | 2.54 | - |
CRP41600 (rutD) | - | 1.92 | 3.22 | - | 3.22 | 0.03 | - | - | - | - | - | - | - | -5.75 | - | - | - | - | - | - | - | - | 1.36 | 1.18 | - | 1.54 | 0.08 | 0.9 | -0.11 | 0.95 | 0.88 | -0.36 | - | - | - | - | - | -10.86 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.97 | 2.67 | 2.15 | 1.52 | 0.82 | - | 3.55 | - | 0.31 | 2.04 | - |
CRP41629 (ethA_1) | - | 1.95 | 2.67 | - | 3.17 | 1.98 | - | - | - | -12.45 | - | - | - | -6.86 | - | - | - | - | - | - | - | - | 1.19 | 1.73 | - | 0.81 | 0.61 | 1.37 | 0.52 | 1.76 | 1.0 | -0.84 | - | - | - | - | - | -11.34 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.32 | 2.18 | 1.6 | 1.7 | 1.35 | - | 3.26 | - | 1.17 | 1.96 | - |
| - | 1.91 | 1.6 | - | 1.66 | 3.01 | - | - | - | -12.81 | - | - | - | -8.48 | - | - | - | - | - | - | - | - | 1.92 | 1.0 | - | 2.2 | 1.95 | 2.0 | 1.01 | 1.85 | 1.94 | -1.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.41 | 1.96 | 1.93 | 1.75 | 2.3 | - | 1.09 | - | 1.16 | 2.07 | - | |
| - | 1.07 | 1.79 | - | 4.18 | 1.95 | - | - | - | - | - | - | - | -5.42 | - | - | - | - | - | - | - | - | 1.43 | 0.72 | - | -0.3 | 1.06 | 0.69 | 1.66 | 0.68 | 1.55 | -0.31 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.93 | 2.39 | 1.97 | 1.91 | 2.13 | - | 2.25 | - | 1.01 | 1.69 | - | |
CRP41754 (puuB_9) | - | 1.61 | 1.68 | - | 3.57 | 2.3 | - | - | - | - | - | - | - | -5.92 | - | - | - | - | - | - | - | - | 1.37 | 1.4 | - | 1.15 | 1.57 | 1.37 | 0.76 | 0.9 | 1.96 | -0.45 | - | - | - | - | - | -12.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.3 | 2.4 | 1.93 | 2.03 | 1.84 | - | 1.82 | - | 1.42 | 1.97 | - |
| - | 2.43 | 2.28 | - | 4.01 | 1.15 | - | - | - | - | - | - | - | -6.56 | - | - | - | - | - | - | - | - | 2.13 | 2.37 | - | -1.09 | 0.56 | 1.43 | 0.16 | 1.5 | 1.57 | -0.09 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.67 | 0.69 | 1.47 | 0.93 | 1.27 | - | 1.49 | - | 0.14 | 3.26 | - | |
| - | 0.76 | 0.69 | - | 4.56 | 1.64 | - | - | - | - | - | - | - | -5.3 | - | - | - | - | - | - | - | - | 1.5 | 0.45 | - | 0.03 | 0.39 | 2.22 | 0.44 | 2.76 | 0.81 | 0.62 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -7.88 | - | - | - | - | - | - | - | - | - | - | - | 1.15 | 1.62 | 1.01 | 0.83 | 0.52 | - | 2.49 | - | 0.54 | 2.56 | - | |
| - | 1.2 | 1.14 | - | 3.96 | 0.88 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.23 | 1.41 | - | 0.54 | 0.62 | 2.02 | 1.16 | 2.59 | 1.08 | -0.2 | - | - | - | -4.39 | - | -11.54 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.42 | 1.82 | 1.09 | 1.07 | 0.9 | - | 1.82 | - | 1.02 | 2.31 | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.