Heatmap: Cluster_16 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19248 (STM0291)
-1.18 1.59 -0.17 -1.09 -0.7 -2.68 1.54 0.25 -0.43 -0.33 0.31 -2.54 0.76 0.16 0.29 -9.15 -0.03 1.6 0.9 1.64 -0.17 -0.57 - 0.89 -0.66 -0.69 - -0.56 -1.63 -2.99 -0.85 -0.65 -1.52 - -0.81 - 1.73 0.26 -0.1
AAL19522 (STM0571)
-0.58 1.33 1.16 -0.21 -0.38 -1.63 -0.67 0.35 0.21 0.99 0.5 -0.96 0.34 0.15 1.72 - 0.84 0.78 0.34 0.85 -0.75 0.37 - - -0.91 -0.45 -0.08 0.36 -1.04 -2.64 -0.62 0.13 -1.12 - 0.45 -0.53 -10.15 -0.3 0.37
AAL19942 (STM1008)
-1.01 2.57 0.75 -0.27 -1.31 -0.57 1.41 0.71 -0.21 -0.81 0.09 -1.16 0.16 -0.51 2.22 -2.8 -0.65 -1.22 -0.12 -0.28 -1.43 0.46 -3.3 -4.81 -1.03 -0.97 - -0.22 -0.05 -3.93 1.37 -0.27 -0.23 -2.91 0.85 - -4.54 -0.5 -0.75
AAL19962 (STM1028)
-0.99 2.37 0.29 -0.45 -1.1 -2.0 -0.09 0.51 0.38 -0.71 1.08 -0.98 0.36 -0.05 -0.2 -0.38 -3.26 1.19 0.44 0.77 -0.4 1.22 -1.43 -1.8 0.11 -0.55 - -0.12 0.26 -2.78 1.13 -0.17 -0.08 -0.77 -1.37 - -1.53 -0.75 -0.45
AAL19964 (STM1030)
-0.87 1.2 -0.52 -0.56 -1.23 -1.66 0.76 1.1 -0.69 -0.48 -0.12 -2.0 -0.57 0.03 0.74 1.23 -1.23 1.18 1.08 1.18 -2.36 -0.1 0.83 -2.44 -0.54 -0.9 -0.2 -0.47 -0.55 -3.62 0.99 -1.19 -0.55 0.68 0.64 -1.04 -1.91 -0.74 -0.73
AAL19965 (STM1031)
-0.92 2.04 0.08 -0.53 -0.17 -1.34 0.37 0.9 0.06 -0.04 0.15 -1.21 0.62 0.9 -0.0 -8.44 -1.84 0.73 0.66 0.9 -0.23 0.15 - - 0.1 -0.32 0.19 0.27 -0.4 -2.77 1.29 -0.52 -0.52 - -0.98 -0.29 - 0.46 0.25
AAL19966 (STM1032)
-0.6 1.8 0.29 -0.31 -0.36 -0.49 0.84 0.57 -0.83 -0.02 -0.63 -1.61 0.66 -0.17 0.73 - -1.67 1.38 1.25 1.35 0.19 0.08 - - 0.01 -1.33 0.05 -0.24 -1.0 -3.24 1.14 -0.5 -0.8 - -0.09 -0.43 - 0.48 -0.15
AAL19967 (STM1033)
-1.05 1.46 0.78 -0.38 -0.29 -0.39 0.74 0.75 -0.29 -0.09 -0.4 -1.46 0.91 0.32 0.65 -9.65 -1.55 1.03 0.64 1.09 0.04 -0.1 - - -0.26 -0.94 0.32 -0.16 -0.7 -3.89 1.43 -0.07 -0.61 - -0.24 -0.14 -10.53 0.36 0.27
AAL19968 (STM1034)
-1.57 1.37 -0.43 -0.83 -1.14 -0.28 0.42 1.57 0.69 -0.43 0.98 -2.14 0.05 0.65 -0.49 -6.89 -1.0 -0.34 0.11 0.18 -0.05 -0.37 - - 0.12 0.02 1.39 0.1 -0.98 -2.19 1.82 -0.78 -0.71 - 0.38 0.73 - -0.09 -0.12
AAL19969 (STM1035)
-1.65 2.14 -0.04 -0.75 -0.62 -0.53 0.63 0.97 -0.34 -0.95 -0.45 -2.43 -0.01 -0.11 0.52 - -0.64 0.19 0.43 1.32 0.67 -1.18 - - -0.21 -1.04 1.29 -0.31 -2.36 - 1.91 -0.28 -1.83 - 0.3 0.77 - 0.4 -0.5
AAL19970 (STM1036)
-0.89 2.28 0.04 -0.66 -0.43 -0.05 -0.59 0.8 -0.35 -0.13 -0.24 -1.83 0.06 -0.01 -0.93 -8.04 -1.26 -0.32 -0.58 -0.12 0.92 0.26 - - 0.12 -0.58 1.52 0.24 -1.06 -3.43 1.92 -0.41 -0.67 - -0.05 0.89 -7.31 0.3 -0.11
AAL19971 (STM1037)
-0.85 1.87 0.59 -0.33 0.03 -0.09 0.41 0.72 -0.04 -0.59 -0.27 -1.47 0.68 -0.32 0.5 - -1.38 0.48 0.05 0.77 -0.01 0.15 - - 0.27 -0.95 0.77 -0.2 -1.41 -5.77 1.61 0.16 -1.14 - -0.33 0.45 -6.7 0.57 0.4
AAL19972 (STM1038)
-1.03 1.6 0.42 -0.26 -0.08 0.28 0.6 0.99 0.2 -0.16 -0.02 -1.52 0.48 -0.06 -0.14 -5.44 -0.98 0.74 0.63 0.96 -0.07 0.14 - - -0.13 -0.21 0.52 -0.08 -1.11 -3.8 1.11 -0.13 -0.86 - 0.6 0.03 -9.72 0.29 0.22
AAL19973 (STM1039)
-0.85 1.73 -0.05 -0.13 -0.05 0.16 0.89 0.62 0.01 -0.11 -0.07 -0.92 0.23 0.2 -0.03 -6.76 -0.74 0.45 0.84 0.89 0.02 -0.46 - - 0.2 -0.07 0.62 -0.1 -0.1 -3.9 0.93 -0.47 -0.16 - 0.46 0.15 -7.02 0.13 0.06
AAL19974 (STM1040)
-0.77 1.89 0.39 -0.35 0.1 0.17 1.07 0.41 -0.14 -0.75 -0.13 -2.08 0.43 0.5 0.47 - -0.93 0.66 0.13 0.6 0.61 -0.64 - - -0.33 -0.32 0.64 -0.33 -0.7 -3.98 1.09 0.06 -0.5 - 0.62 -0.25 - 0.54 -0.03
AAL19975 (STM1041)
-0.97 1.97 0.21 -0.3 -0.44 -1.39 1.03 1.11 -0.28 -0.22 -0.13 -2.07 0.48 0.41 0.47 -7.9 -0.7 1.12 1.32 1.25 0.05 -0.09 - - -0.27 -0.83 -1.11 -0.03 -0.32 -4.01 0.5 -0.11 -0.19 - 0.2 -1.58 -9.72 0.2 0.22
AAL19979 (STM1045)
-0.34 1.14 0.42 -0.22 -0.28 -1.77 -0.1 0.7 -0.18 0.06 -0.02 -1.74 0.43 0.09 0.71 -0.41 0.26 1.04 1.03 1.31 -1.06 -0.15 -0.65 -2.34 -0.53 -0.6 0.07 -0.01 -0.84 -2.83 0.08 -0.12 -0.75 -0.28 0.8 -0.58 -1.63 -0.34 0.18
AAL19980 (STM1046)
-0.46 1.06 0.01 -0.23 -0.42 -1.21 -0.4 0.65 -0.19 -0.29 0.13 -2.12 0.09 0.73 2.3 -3.33 -0.18 1.43 0.9 1.37 -1.22 -0.62 -3.58 -4.98 -0.78 -0.3 -0.19 -0.24 -1.06 -4.55 0.05 -0.5 -1.12 -3.09 1.09 -1.3 -4.01 0.17 0.14
AAL19981 (STM1047)
-0.68 1.68 0.31 0.11 -0.57 -0.35 -0.21 0.83 0.49 0.51 0.47 -1.38 -0.08 0.66 1.72 - -0.29 0.55 0.76 0.95 -0.67 0.38 - - -0.34 0.1 0.06 -0.52 -0.82 -3.29 -0.13 -0.64 -0.79 - 0.64 -0.48 -8.01 -0.27 -0.01
AAL19982 (STM1048)
-0.3 1.89 0.16 -0.69 -0.38 -1.2 -0.35 0.95 0.39 -0.1 0.92 -2.03 0.56 1.28 -0.03 -0.82 -1.77 0.2 0.22 0.4 -0.4 0.66 -1.27 -1.74 -0.39 -0.41 -0.49 0.18 -0.43 -3.12 0.66 0.01 -0.48 -0.84 -0.72 -0.73 -1.61 -0.26 0.63
AAL19984 (STM1050)
-0.91 1.36 1.43 -0.33 -0.92 0.53 0.38 0.59 -1.01 -0.13 -0.39 -2.3 0.17 -0.92 -0.23 -0.89 -1.2 0.66 0.57 0.93 1.79 -0.23 -2.54 -2.7 2.06 0.05 -4.12 -0.34 -0.7 -2.03 -0.47 -0.49 -0.72 -1.06 0.37 -3.54 -2.15 -0.44 -1.29
AAL21483 (STM2588)
-0.2 1.68 0.68 -0.5 -0.69 -1.46 -0.02 0.97 0.96 -0.06 1.38 -1.37 0.61 0.99 -0.2 -2.48 -7.88 0.84 0.75 1.11 -0.24 0.07 -3.29 -2.84 -0.12 -0.3 -0.9 0.22 -0.07 -3.14 0.37 -0.36 0.11 -2.07 -6.26 -1.39 -1.33 -0.38 0.01
AAL21484 (STM2589)
-0.16 2.42 0.97 -0.05 -0.77 0.67 -0.18 0.58 -0.2 -0.22 0.27 -2.05 0.78 0.15 -0.45 -2.65 -3.86 1.08 1.01 1.23 -0.07 0.02 -3.21 -4.25 0.36 -0.51 -1.9 -0.1 -0.48 -2.49 0.22 -0.24 -0.03 -2.18 -2.56 -2.4 -3.84 -0.26 0.18
AAL21485 (STM2590)
-0.24 2.2 0.76 0.31 -0.49 1.75 -0.9 0.21 -0.41 -0.1 0.04 -1.04 0.51 0.46 0.34 -8.63 - 0.7 0.5 0.68 0.75 -0.3 - - 0.73 0.35 - -0.61 0.35 -2.5 -0.96 -0.38 0.61 - - - - -0.08 0.74
AAL21486 (STM2591)
-0.49 1.72 0.11 0.29 -0.56 0.63 0.73 0.52 -0.35 -0.48 0.02 -1.02 0.21 0.4 0.84 - - 1.97 1.59 1.82 -1.0 -0.86 - - 0.27 0.25 - -0.36 -0.28 -2.79 -0.64 -0.74 0.17 - - - - -0.65 0.53
AAL21487 (STM2592)
0.16 1.18 0.88 -0.19 0.29 -0.57 -0.35 0.72 -0.08 0.46 0.14 -1.72 1.12 0.67 -0.11 - - 1.37 1.13 1.45 0.07 -0.44 - - -0.01 -0.17 - 0.04 -0.29 -1.87 -0.56 0.67 -0.02 - - - - 0.35 1.23
AAL21488 (STM2593)
-0.22 1.8 1.27 0.01 -0.26 -0.6 -0.02 0.2 -0.87 0.31 -0.59 -2.59 1.76 -0.14 -0.06 - - 0.96 1.28 1.46 -0.18 -1.21 - - 0.59 -0.92 - 0.22 -0.38 -3.21 0.08 0.56 -0.05 - - - - 0.45 1.22
AAL21489 (STM2594)
-0.13 1.49 0.92 0.1 -0.31 -0.2 0.09 0.47 -0.82 0.03 -0.6 -1.99 1.06 0.2 0.6 -9.62 - 1.54 1.42 1.72 -0.16 -0.29 - - -0.14 -0.55 -3.24 0.39 0.11 -3.23 -0.22 0.35 0.21 - - -3.49 -12.55 0.07 0.79
AAL21490 (STM2595)
-0.35 2.59 1.59 0.55 -0.58 1.58 -0.87 0.01 -1.14 -0.53 -0.69 -2.3 1.11 -0.32 -1.77 - - 0.93 0.58 0.91 -0.56 -0.35 - - 0.3 -0.69 - -0.37 0.66 -6.35 -0.04 0.03 0.93 - - - - 0.02 0.49
AAL21491 (STM2596)
-0.87 2.48 1.3 0.22 -0.92 1.17 0.29 0.22 -1.44 -0.66 -1.04 -2.41 0.72 -0.85 0.39 - - 1.66 1.93 1.84 -0.49 -0.74 - - -0.37 -0.78 - -0.71 -1.12 -5.53 0.3 -0.41 -0.23 - - - - -0.14 -0.23
AAL21492 (STM2597)
-0.75 0.76 1.52 0.28 -0.47 1.31 -0.82 0.45 -0.72 0.33 -0.7 -1.98 1.08 0.47 0.18 -7.5 - 1.1 1.21 1.34 0.39 -0.42 - - 0.41 0.33 - 0.53 0.65 -3.38 -0.26 -0.1 0.57 - - - - 0.05 0.15
AAL21493 (STM2598)
-0.38 0.88 1.14 0.15 -0.35 0.9 -0.09 0.47 -0.51 0.26 -0.17 -2.87 0.91 0.48 0.04 -9.39 - 1.46 1.24 1.48 0.38 -0.38 - - -0.06 -0.2 - 0.93 0.31 -2.8 0.06 0.22 0.08 - - - - 0.22 0.42
AAL21495 (STM2600)
0.74 1.2 1.3 -0.33 0.15 -0.62 0.36 0.52 -0.77 -0.19 -0.66 -1.34 1.2 0.36 0.61 -10.54 - 1.37 1.25 1.61 -0.6 -0.11 - - -0.22 -0.67 - 0.35 -0.1 -3.19 -0.41 0.48 -0.15 - - - - 0.39 0.95
AAL21496 (STM2601)
-0.76 1.5 1.84 0.01 -0.22 0.71 -0.46 0.13 -0.85 0.03 -0.92 -1.56 1.41 -0.62 -0.16 -9.17 - 0.94 0.85 1.14 0.65 -0.54 - - 0.59 -0.84 - 0.52 -0.24 -3.52 0.69 0.43 -0.14 - - - - 0.82 0.84
AAL21497 (STM2602)
-0.65 1.63 1.59 0.23 -1.04 0.95 0.57 0.84 -0.85 0.36 -0.94 -1.83 1.03 -0.37 0.67 - - 1.13 1.11 1.21 -0.22 -0.96 - - 0.18 -0.74 - 0.48 -0.25 -3.51 0.66 0.09 0.11 - - - - 0.08 0.56
AAL21498 (STM2603)
-0.88 1.75 2.13 0.09 -0.47 1.69 -0.56 0.01 -0.9 0.24 -0.92 -1.52 1.45 -0.46 -0.29 -11.08 - 0.31 0.16 0.39 -0.09 -0.55 - - 0.05 -0.84 - 0.37 0.02 -3.11 0.62 0.86 0.45 - - - - 0.2 0.99
AAL21499 (STM2604)
-0.92 1.62 2.07 0.23 -0.88 2.36 -1.21 -0.39 -1.14 0.14 -1.04 -1.54 1.23 -1.18 -1.09 - - -0.6 -0.23 -0.0 1.09 -0.28 - - 1.05 -0.28 - -0.27 0.31 -3.58 0.76 0.46 0.66 - - - - -0.18 0.58
AAL21500 (STM2605)
-0.52 2.07 1.94 0.35 -0.63 2.04 -1.37 0.01 -0.38 -0.18 0.11 -1.67 1.24 -0.4 -0.23 -11.17 - -0.27 -0.31 -0.01 -0.25 0.02 - - 0.0 -0.57 - 0.04 0.41 -3.4 0.55 0.54 0.91 - - - - -0.04 0.53
AAL21501 (STM2606)
0.1 1.65 1.36 -0.07 0.02 0.3 -0.68 0.6 -0.31 0.18 0.12 -2.18 1.07 0.64 -1.31 - - 0.37 0.41 0.6 0.36 -0.17 - - 0.36 -0.03 - 0.66 0.56 -2.54 0.46 0.61 0.87 - - - - 0.35 0.82
AAL21502 (STM2607)
-0.0 2.42 -0.74 0.43 -2.14 1.13 0.62 0.45 -1.17 -0.49 -1.02 -3.21 -1.38 -1.08 2.18 - - 2.16 0.87 1.75 0.95 -0.02 - - -0.35 -1.0 - -0.69 0.41 -5.31 -0.97 -1.0 0.32 - - - - -2.65 -
AAL21503 (STM2608)
-0.28 2.22 1.18 0.11 -0.46 0.09 -0.15 0.41 -0.23 0.01 0.41 -1.81 1.11 0.29 -0.29 -11.06 - 0.84 0.78 0.93 -0.02 0.47 - - 0.16 0.06 - 0.15 0.36 -2.47 0.0 0.08 0.84 - - - - -0.17 0.29
AAL21504 (STM2609)
0.3 2.36 1.81 0.32 -0.95 0.85 -1.2 0.56 -0.59 -0.38 0.52 -2.85 1.15 -0.91 -0.77 - - 0.01 0.31 0.31 -0.83 0.71 - - 0.5 -1.01 - 0.22 0.78 -3.08 0.54 -0.31 1.55 - - - - -0.03 -0.85
AAL21508 (STM2613)
-0.22 3.21 -0.56 -0.16 -1.8 -2.5 -1.31 1.17 -0.25 -2.05 0.96 -1.06 0.23 -2.19 -1.7 -1.3 -6.44 0.04 0.29 0.29 -1.49 1.02 -2.55 -2.55 0.77 -0.95 - 0.29 0.56 -4.03 1.29 -1.67 1.54 -1.12 -1.61 - -1.66 -2.97 -1.08
AAL21627 (STM2741)
-1.31 0.93 0.42 -1.05 -0.39 -3.5 -2.5 0.4 -0.8 1.07 -0.37 -2.92 1.61 -2.47 0.03 -9.5 -3.02 1.74 1.19 1.8 -1.75 -1.89 - - -1.39 -2.97 -1.27 0.45 -2.54 -6.16 1.37 1.39 -2.79 - -1.02 -2.34 - -0.25 2.47
AAL21649 (STM2763)
-1.23 1.33 0.95 -0.09 -0.69 -3.08 0.53 0.35 -0.59 0.46 -0.61 -1.95 0.47 -0.51 1.57 -7.78 -0.06 1.3 1.11 1.47 -0.59 0.95 - - -1.48 -1.02 -1.38 0.17 0.15 -0.53 -0.09 0.25 -0.31 - 0.01 -0.75 -10.25 0.09 -0.01
AAL22612 (STM3754)
-0.46 1.04 0.64 -0.15 -0.32 -1.77 0.94 0.57 -0.03 0.46 -0.04 -0.26 0.6 0.41 1.27 -3.56 0.22 0.26 0.31 0.68 -0.5 0.42 -3.5 -1.78 -1.21 -0.41 -0.67 0.42 -0.0 -2.24 -0.32 0.54 -0.47 -2.86 0.25 -0.61 -0.81 -0.36 0.53

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.