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Heatmap: Cluster_19 (HCCA)

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(Showing raw values)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19232 (STM0275)
 5.95 18.53 6.55 3.16 2.92 1.77 7.04 5.68 4.79 2.4 9.82 1.12 3.84 2.21 7.05 0.0 4.83 4.77 5.93 6.59 5.08 9.06 0.0 0.0 5.44 2.62 0.0 3.63 1.82 2.98 1.09 3.52 1.87 0.0 2.06 0.0 0.0 2.74 3.13
AAL19234 (STM0277)
 2.49 10.63 1.3 1.49 1.08 0.45 2.14 15.44 7.16 0.93 13.85 1.3 1.77 1.47 5.56 0.0 8.22 3.27 3.42 4.23 0.66 1.18 0.0 0.0 1.4 1.38 2.39 1.86 1.23 1.42 6.32 1.3 0.83 0.0 2.24 1.63 0.0 0.84 0.93
AAL19235 (STM0278)
 2.12 11.17 0.72 1.11 0.65 0.54 1.11 4.85 5.96 0.75 17.91 0.6 0.94 0.73 2.31 0.0 4.73 3.01 1.83 2.62 0.2 0.58 0.0 0.0 1.31 1.45 2.33 1.97 1.13 0.98 1.21 0.64 1.14 0.0 0.63 2.15 0.0 0.84 0.96
AAL19236 (STM0279)
 1.58 8.13 1.83 1.68 1.88 0.59 1.21 4.83 5.85 1.51 14.17 0.52 1.74 1.3 2.22 0.0 4.87 2.22 3.16 3.0 1.12 1.71 0.0 0.03 2.0 2.79 2.22 3.37 1.61 0.95 2.03 1.61 1.34 0.0 1.13 1.85 0.15 1.84 1.93
AAL19241 (STM0284)
 1.21 16.85 0.7 1.37 0.17 0.46 3.16 6.61 1.95 0.55 6.24 0.48 0.66 0.58 1.83 0.0 4.4 4.22 2.0 2.72 0.16 1.03 0.0 0.0 2.48 0.78 2.74 0.48 0.46 0.31 0.63 0.51 0.66 0.0 0.62 2.69 0.0 0.69 0.76
AAL19251 (STM0294)
 5.27 27.55 0.94 2.05 1.13 0.72 6.89 4.53 4.08 1.22 25.47 1.31 1.32 3.47 4.1 0.05 14.18 2.63 4.39 4.88 8.86 1.69 0.0 0.0 7.37 1.82 0.0 5.64 4.29 3.34 0.49 1.18 4.09 0.0 1.41 0.0 0.0 1.49 2.68
AAL19252 (STM0295)
 3.91 21.32 3.52 2.35 1.22 0.92 12.98 9.03 6.74 3.33 39.8 1.7 3.48 3.65 4.76 1.43 10.82 6.6 7.25 8.69 3.78 9.07 2.31 1.8 9.63 4.51 0.0 6.95 1.64 6.27 1.44 0.68 1.48 7.07 2.26 0.0 2.76 1.7 2.82
AAL19426 (maa)
 115.23 106.79 130.91 38.8 76.5 11.08 121.21 62.03 97.05 34.46 173.07 36.34 296.29 49.58 77.93 87.21 153.25 75.31 74.53 93.86 67.13 147.38 48.62 108.24 117.07 58.81 41.29 106.52 37.55 14.4 25.59 82.46 43.71 77.83 182.59 26.96 179.73 102.41 114.38
AAL19501 (fimH)
 3.44 21.22 13.22 5.66 1.4 2.12 9.79 16.22 4.59 21.47 8.29 1.95 3.94 4.76 62.75 4.63 11.55 36.53 68.08 61.02 2.66 3.67 12.45 45.51 3.28 7.57 3.52 11.88 3.62 1.6 25.95 8.67 4.04 8.48 5.77 2.92 119.07 2.97 2.13
AAL19506 (fimW)
 4.67 23.24 11.59 3.88 1.25 0.84 6.49 6.71 8.0 26.23 23.56 1.07 2.3 2.36 21.01 5.54 4.6 29.35 31.58 49.03 1.14 5.33 20.58 54.27 3.85 4.08 3.67 9.03 2.29 8.04 11.41 8.53 2.31 7.48 2.07 6.82 99.98 2.07 2.61
AAL19605 (ybeQ)
 11.47 29.67 52.7 8.07 32.53 2.88 15.42 17.65 12.88 13.57 17.4 3.1 81.75 9.12 23.81 42.02 8.03 27.67 24.89 36.9 7.63 14.43 26.9 2.32 12.95 8.5 5.48 22.82 5.22 3.63 12.92 54.49 5.58 54.37 7.4 3.81 4.86 28.39 70.01
AAL19623 (STM0672)
 23.92 34.85 25.85 9.49 17.05 1.76 25.91 25.1 12.4 11.68 19.31 6.24 64.53 19.5 18.33 35.65 8.59 19.41 22.66 28.76 11.73 13.82 32.38 5.78 13.02 7.7 8.35 20.86 10.3 7.69 17.54 40.36 11.9 48.65 14.47 7.59 5.25 23.93 48.89
AAL19703 (STM0764)
 3.58 16.86 3.48 3.11 4.41 0.85 4.65 10.84 3.0 6.36 7.77 2.95 9.99 1.85 11.03 5.61 3.62 5.53 4.48 7.14 1.97 3.41 10.55 1.43 5.71 2.17 2.76 3.07 3.19 5.45 2.15 6.08 2.6 8.43 4.11 1.88 2.07 3.15 24.29
AAL19704 (STM0765)
 0.98 10.75 0.34 0.85 0.35 0.45 0.41 5.08 0.72 0.41 2.68 0.02 0.51 0.16 0.63 1.04 1.82 0.39 0.76 0.92 0.32 1.37 0.75 0.62 2.07 0.28 1.0 0.43 0.43 0.27 0.15 0.2 0.53 2.71 1.08 1.15 1.28 0.19 2.11
AAL19746 (STM0809)
 1.91 22.8 1.42 1.63 0.39 0.87 3.46 7.87 8.48 0.9 17.12 1.05 2.07 2.69 1.31 19.79 2.68 4.63 4.63 5.17 2.3 3.3 4.14 9.98 4.45 1.64 2.62 2.64 1.04 0.68 0.35 0.43 1.29 18.45 2.57 1.99 27.44 0.95 0.97
AAL19790 (STM0854)
 3.21 20.35 1.94 2.09 1.49 0.9 3.46 14.87 2.8 1.56 10.21 1.64 7.07 2.57 2.89 7.06 1.96 3.34 3.5 4.19 5.25 1.48 5.65 1.21 7.07 1.25 3.48 2.72 3.42 1.62 3.1 1.35 3.62 4.85 1.15 2.07 3.49 1.44 3.7
AAL19791 (STM0855)
 2.86 14.1 3.1 2.2 2.28 1.82 7.55 19.0 2.87 2.5 10.77 0.48 5.93 2.56 7.88 9.5 3.81 9.42 9.08 9.35 4.09 2.81 7.16 0.99 6.02 1.48 3.7 3.86 3.31 1.2 5.94 2.91 2.85 7.97 1.92 2.11 3.2 2.48 5.13
AAL19792 (STM0856)
 3.84 13.35 5.87 2.51 1.94 1.6 7.56 20.12 8.17 2.69 21.13 0.97 6.64 3.77 7.62 8.33 5.56 9.37 9.91 11.23 3.73 3.73 4.32 1.14 5.08 2.55 3.25 4.53 3.91 0.82 3.57 2.34 3.91 10.86 2.59 1.74 2.64 2.08 3.78
AAL19796 (STM0860)
 56.75 54.47 160.42 14.3 36.17 9.98 36.24 70.29 56.83 17.4 93.87 5.58 159.66 60.9 22.82 63.45 18.48 93.08 100.57 140.1 54.44 14.73 25.73 4.2 23.72 20.69 15.83 75.7 18.84 10.61 82.72 36.07 25.82 58.19 16.13 8.29 7.01 57.09 50.77
AAL20169 (envF)
 7.55 14.85 2.09 2.7 1.37 0.2 3.45 8.65 10.73 1.23 33.82 0.47 2.87 4.92 1.95 8.59 10.29 4.4 5.48 6.32 8.07 1.88 4.05 0.72 7.24 2.3 3.23 4.45 7.69 0.69 1.74 1.21 10.08 12.29 19.99 1.33 1.41 4.17 1.27
AAL20269 (ydiV)
 19.24 51.18 41.32 10.33 14.49 14.98 64.79 38.67 15.33 19.69 22.27 5.71 72.71 77.5 23.35 54.55 13.78 34.29 35.6 52.03 75.22 106.46 16.23 63.77 43.65 50.13 12.19 30.2 19.06 7.35 20.51 6.42 17.52 42.11 12.76 5.21 120.26 34.85 17.06
AAL20275 (ydiD)
 6.76 21.28 10.12 4.98 8.68 4.56 9.13 13.45 7.29 10.56 10.88 1.5 13.81 15.16 8.41 17.8 3.57 11.84 16.57 15.09 5.56 12.02 12.81 3.63 4.77 8.33 4.17 7.99 5.89 1.73 7.09 7.05 6.05 15.75 5.06 3.37 4.05 12.78 8.21
AAL20276 (ydiT)
 3.28 16.2 2.37 2.92 3.27 2.84 1.68 4.9 2.16 2.92 4.37 2.93 3.05 4.76 0.7 8.93 0.67 1.32 2.33 3.34 8.75 2.7 4.41 1.82 8.7 5.29 3.19 3.32 3.43 0.29 1.82 2.81 1.85 6.16 1.09 3.35 2.99 2.16 2.1
AAL20286 (ydiM)
 1.48 12.62 2.11 1.35 0.65 0.18 1.46 6.81 2.01 0.99 4.78 0.22 1.65 1.15 1.21 3.06 1.29 4.73 3.48 6.19 0.71 1.23 2.4 0.73 2.59 1.09 1.61 2.42 1.29 0.19 1.24 0.63 1.37 4.56 2.16 1.19 1.1 1.03 1.2
AAL20316 (ssrA)
 4.47 37.05 37.15 2.78 1.13 20.81 18.87 27.78 6.17 12.51 17.79 1.36 5.11 8.03 5.46 24.4 9.9 17.77 15.71 21.13 47.42 105.78 6.01 55.37 47.36 3.71 2.93 8.01 2.46 4.41 45.07 3.44 3.25 8.94 2.5 5.65 135.76 1.98 1.33
AAL20585 (STM1668)
 0.95 11.71 1.65 0.96 0.58 0.37 1.14 3.29 1.73 0.97 6.94 0.18 1.08 1.0 1.34 1.78 2.1 2.45 2.28 2.34 0.54 1.12 1.6 26.25 2.25 1.21 0.21 1.59 0.49 0.41 0.74 0.73 0.73 1.69 0.83 0.21 89.4 1.01 0.46
AAL20812 (STM1896)
 3.61 24.5 2.34 2.46 0.35 0.48 7.64 8.96 3.41 0.96 11.76 0.35 4.99 4.59 1.87 0.0 6.59 4.63 3.72 7.16 2.0 3.61 0.0 0.0 9.02 2.43 0.0 2.05 2.39 1.33 0.87 0.84 3.15 0.0 5.52 0.0 0.0 0.93 1.17
AAL20846 (araH)
 8.58 35.0 15.22 14.48 11.93 1.91 7.68 21.1 13.81 13.96 12.08 21.37 17.96 10.25 17.29 8.64 7.59 22.39 20.9 25.87 5.58 5.94 10.09 102.96 7.56 3.9 22.79 18.74 31.81 0.29 18.49 14.98 41.1 8.04 11.25 28.72 123.41 11.69 20.95
AAL20913 (STM2007)
 2.63 16.47 1.73 3.36 1.2 2.75 3.43 5.76 2.94 3.18 7.34 0.72 1.41 1.53 6.87 1.87 3.79 4.12 4.52 5.64 0.83 3.73 2.9 0.85 3.1 1.9 2.44 2.43 2.9 0.98 1.48 1.84 3.98 2.7 2.09 2.19 1.34 1.58 1.8
AAL21591 (STM2704)
 0.0 20.81 0.0 0.0 0.0 0.0 14.87 22.06 0.0 0.0 0.0 1.53 0.07 4.31 7.25 0.0 23.28 0.0 0.0 0.0 0.0 5.04 0.0 32.75 0.0 0.0 0.0 0.0 0.0 0.0 8.69 0.0 0.0 0.0 24.12 0.0 118.45 0.0 0.0
AAL21835 (STM2955)
 151.63 181.82 282.38 106.21 124.25 121.06 194.32 189.48 167.29 135.42 350.46 45.25 216.05 174.31 233.92 0.03 134.92 125.89 96.42 160.67 134.91 202.28 0.0 157.6 99.14 126.76 37.35 183.39 137.36 173.33 262.07 165.98 104.61 0.0 120.2 43.33 352.31 223.59 209.22
AAL21899 (yohL)
 67.15 128.0 82.19 57.3 22.91 12.39 132.85 79.4 107.89 57.96 300.64 89.66 37.62 43.86 144.27 113.14 167.4 87.72 82.87 116.32 52.6 80.36 62.04 136.9 69.67 32.42 34.1 99.9 50.19 142.73 120.6 25.6 104.49 687.47 125.59 46.88 581.57 27.34 22.7
AAL21992 (STM3118)
 17.09 30.96 25.79 11.14 10.37 5.14 21.75 17.65 15.31 11.39 72.85 5.66 21.73 13.65 22.23 31.54 20.38 20.88 19.44 24.19 9.02 7.86 19.93 6.0 7.9 12.18 10.83 16.54 8.8 1.53 9.18 12.31 10.34 22.37 177.34 8.71 9.03 12.52 17.37
AAL21993 (STM3119)
 12.1 26.45 27.05 11.92 13.23 7.22 14.71 18.99 18.01 12.86 30.93 7.96 31.52 22.01 12.39 30.19 6.91 10.84 9.99 14.23 12.75 8.65 20.18 7.83 8.79 16.1 13.72 22.03 14.01 2.82 17.78 17.77 15.58 23.86 36.15 9.7 11.6 18.52 21.52
AAL21994 (STM3120)
 10.68 31.07 30.25 15.02 11.78 7.26 15.72 26.18 15.08 11.5 27.52 5.01 27.23 22.82 24.98 24.54 12.79 18.95 20.51 26.8 12.03 18.51 19.77 8.56 11.63 12.77 10.71 20.73 14.33 3.59 19.59 16.74 14.56 18.67 23.79 10.04 11.82 13.96 19.31
AAL21996 (STM3122)
 15.32 31.69 42.45 10.42 24.02 2.53 27.42 33.06 15.26 13.46 22.42 5.06 52.83 21.41 22.81 25.45 22.64 40.69 32.78 46.79 14.1 17.5 22.84 5.75 11.44 9.98 12.0 22.73 10.83 2.71 16.58 37.92 10.53 27.92 23.4 10.41 6.72 27.48 46.04
AAL21997 (STM3123)
 3.55 15.99 9.82 2.24 2.63 1.77 4.85 8.79 5.08 3.91 11.45 1.58 9.29 6.74 2.67 5.72 5.8 6.3 6.34 8.44 3.87 4.02 2.63 1.82 4.9 5.52 2.69 5.27 2.68 0.63 2.93 2.52 3.07 7.79 3.83 2.96 2.06 4.46 3.5
AAL22034 (STM3160)
 23.21 32.5 12.88 0.45 0.0 0.0 240.8 13.62 1.46 10.04 3.67 0.0 13.85 0.0 0.0 0.0 0.0 0.0 0.0 0.0 10.78 0.0 0.0 251.77 27.31 0.0 2.9 18.87 0.0 0.0 0.0 16.83 0.0 0.0 0.0 0.0 377.04 8.3 9.46
AAL22258 (envR)
 3.56 11.39 0.64 1.65 0.49 0.16 1.71 5.95 2.47 0.94 7.33 1.04 1.52 0.77 6.44 1.49 4.47 2.22 1.73 2.33 0.65 1.41 1.3 1.3 3.4 0.47 3.27 0.92 1.12 1.09 0.53 0.71 1.44 4.07 3.73 2.17 1.98 0.74 1.19
AAL22481 (yhjR)
 100.23 218.85 657.0 101.46 143.3 80.31 766.1 157.36 367.84 198.0 727.38 90.87 671.31 213.34 138.04 176.03 123.29 95.59 171.76 167.24 249.07 108.23 33.27 282.17 406.58 287.89 119.69 502.25 72.35 166.16 281.36 241.19 58.16 207.86 51.35 178.73 436.32 304.6 268.62
AAL22482 (yhjS)
 26.39 54.84 110.88 30.59 33.85 13.53 42.53 31.07 32.89 36.46 46.84 29.45 105.93 26.03 37.47 40.18 28.17 46.04 44.83 54.29 34.57 22.65 9.98 49.47 47.0 63.08 28.84 78.89 48.48 17.26 33.49 51.14 37.07 45.99 21.56 28.17 80.99 42.17 69.95
AAL22500 (lpfA)
 4.96 9.02 5.31 2.26 2.86 4.39 1.83 6.28 9.5 2.63 23.49 1.11 7.93 2.22 1.13 10.48 2.73 2.42 1.21 2.32 3.91 4.23 9.29 3.19 4.32 3.66 4.08 4.49 3.86 5.09 1.19 4.27 3.48 11.81 0.7 3.54 3.79 3.85 5.89
AAL22616 (fidL)
 24.54 32.21 44.05 10.29 17.93 7.74 28.93 19.88 12.33 7.01 31.85 7.04 69.31 18.18 15.79 61.52 17.42 26.51 28.57 32.79 37.51 10.75 12.9 18.95 43.88 21.57 12.89 23.78 14.19 8.96 17.2 15.89 15.91 63.33 31.41 7.29 51.15 27.12 24.21
AAL22756 (STM3906)
 62.34 86.81 63.78 27.75 29.2 13.8 142.93 73.82 97.3 41.83 220.33 21.98 47.77 96.91 123.32 48.39 103.22 49.34 28.29 62.75 13.66 23.36 67.98 82.17 13.13 32.47 31.53 76.28 29.58 86.7 20.84 33.93 30.96 110.58 219.78 28.69 179.45 48.03 35.51
AAL22757 (STM3907)
 54.25 81.48 70.1 40.96 43.6 38.1 78.14 72.98 101.87 59.17 188.39 24.07 59.49 131.46 71.83 73.63 62.0 36.35 38.2 55.34 31.19 35.0 83.3 77.72 34.9 47.49 38.92 77.16 51.03 125.66 34.93 42.96 51.9 120.77 93.92 36.17 154.06 63.45 48.12
AAL22789 (STM3944)
 15.65 26.96 23.1 5.77 8.25 1.72 20.29 10.05 10.79 6.2 36.63 4.47 26.32 6.32 5.18 14.33 10.83 10.75 16.16 18.59 8.31 11.89 6.55 21.2 11.25 5.58 5.15 10.99 5.48 1.15 2.47 10.12 4.84 16.18 17.84 5.36 40.03 10.96 16.91
AAL22872 (STM4033)
 105.58 168.29 133.4 44.28 75.84 25.11 271.88 66.6 181.84 124.98 390.73 43.97 126.04 54.22 91.61 100.27 52.67 71.31 82.95 93.81 61.9 69.14 91.5 48.3 76.3 44.4 49.13 131.61 46.41 42.41 86.4 97.52 42.39 106.05 51.24 75.52 34.22 113.72 138.25
AAL23021 (STM4197)
 2.96 21.78 0.0 1.21 1.77 0.18 0.76 4.86 2.38 1.04 11.54 2.24 2.4 0.91 1.59 2.61 5.01 0.49 1.03 1.43 1.23 1.62 0.41 1.15 8.27 1.02 4.61 1.89 1.89 1.88 0.91 1.3 2.36 5.73 0.8 3.35 2.46 1.39 1.45
AAL23240 (STM4420)
 18.17 34.65 25.06 25.4 25.76 17.43 8.99 36.34 44.87 39.05 45.55 8.41 23.11 20.92 27.33 0.0 22.17 23.12 20.53 28.5 7.61 15.19 0.0 0.0 11.84 15.75 0.0 27.7 10.64 4.28 12.9 35.85 9.93 0.0 17.53 0.0 0.0 20.67 56.2
AAL23241 (STM4421)
 7.41 18.99 9.77 18.74 10.58 12.58 4.28 10.05 15.28 18.28 15.25 4.46 8.81 8.86 14.69 0.0 8.07 11.73 13.37 15.31 3.15 3.99 0.0 0.0 4.52 7.3 0.0 13.85 5.86 0.76 6.86 18.28 5.12 0.0 7.27 0.0 0.0 10.92 16.25
AAL23243 (STM4423)
 2.74 17.62 10.6 6.51 9.88 0.4 3.06 13.18 11.9 28.28 10.63 1.22 5.78 1.28 10.39 0.0 18.15 19.75 12.31 23.39 0.48 1.76 0.0 0.0 3.0 1.63 0.0 12.36 1.14 0.79 0.97 15.38 1.48 0.0 6.41 0.0 0.0 10.27 8.76
AAL23244 (STM4424)
 0.89 9.22 3.47 1.34 0.86 0.92 0.42 5.02 1.64 2.3 4.43 0.33 2.49 0.42 1.22 0.0 1.0 1.04 0.93 1.55 1.57 2.08 0.0 0.0 3.27 0.5 0.0 3.84 0.84 0.33 0.16 1.15 0.69 0.0 0.59 0.0 0.0 0.85 1.01
AAL23245 (STM4425)
 7.29 17.95 15.97 4.49 3.97 3.9 4.87 8.11 11.65 8.28 19.5 2.93 14.43 7.04 3.21 0.01 5.0 4.13 4.46 6.33 5.31 8.09 0.0 0.0 6.81 8.81 0.0 10.83 5.57 3.6 3.73 5.31 6.06 0.0 3.94 0.0 0.0 4.96 4.96
AAL23255 (STM4435)
 3.06 19.13 27.21 5.96 3.28 8.85 3.73 7.36 8.23 7.42 13.65 1.05 9.05 1.81 6.33 0.0 11.18 12.83 11.33 15.69 3.31 3.03 0.0 0.0 6.12 4.68 0.0 7.86 3.01 0.37 3.01 4.52 2.94 0.0 4.34 0.0 0.0 7.63 3.08
AAL23304 (idnK)
 8.68 34.78 19.3 17.71 12.82 3.14 16.33 17.27 22.37 26.33 37.07 4.08 17.78 4.84 62.75 48.26 11.78 49.65 39.57 54.07 5.12 13.36 58.95 4.7 15.19 8.63 7.39 20.99 5.99 4.43 16.96 20.89 5.91 67.39 11.41 7.28 6.12 12.58 29.46
AAL23479 (traM)
 13.06 47.5 6.75 9.25 10.66 13.44 14.04 17.79 2.73 10.51 6.54 5.13 8.99 14.2 14.96 8.65 63.64 13.19 18.86 18.66 6.23 13.62 36.79 8.82 16.2 13.44 0.0 10.98 7.38 16.98 10.64 7.85 6.04 9.93 28.81 0.0 25.23 8.03 13.37
AAL23488 (trbD)
 8.56 37.1 38.25 8.84 7.38 20.07 6.18 20.85 2.4 20.18 4.35 2.32 13.84 41.04 0.72 41.26 6.57 6.27 5.06 7.06 10.33 5.5 12.69 5.6 15.34 18.9 0.0 10.48 12.18 1.55 7.62 9.9 12.9 30.55 2.14 0.0 9.42 16.77 4.65

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)