Heatmap: Cluster_43 (HCCA)

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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19063 (STM0099)
-0.96 2.94 -3.39 -2.19 -3.15 -0.52 0.99 -0.21 -2.51 -0.07 -1.01 -2.63 -3.0 -1.59 -2.46 -1.71 1.14 -1.55 -1.15 -1.13 -2.59 3.45 -3.96 0.13 1.28 -3.16 -1.17 -0.99 -1.81 -4.52 -3.74 -3.44 -1.78 -2.29 0.19 -1.91 1.19 -4.69 -2.5
AAL19155 (fhuA)
1.43 0.15 0.1 -1.74 -3.34 0.31 1.41 1.42 -1.2 -3.01 0.13 -5.01 0.17 2.53 -4.06 -2.02 -0.21 -0.73 -0.17 -0.42 0.78 1.43 -6.92 -0.68 -0.03 -0.01 -2.46 -1.39 -1.75 -2.36 -3.22 -0.5 -4.0 -7.3 0.14 -2.35 0.4 -0.67 1.56
AAL19264 (STM0307)
-0.88 -0.03 -0.7 -1.06 -1.17 2.54 1.39 0.09 -0.79 -1.26 -0.01 -1.91 -0.54 -1.12 0.78 -0.16 -0.79 -1.18 -1.03 -0.87 0.32 -1.09 0.36 0.5 1.07 -1.37 0.49 -0.33 -1.78 -2.34 -1.27 -1.01 -1.8 -0.79 0.72 -0.85 1.91 -1.28 -0.63
AAL19423 (rpmE2)
4.88 1.39 -2.99 0.34 -4.41 -5.77 -4.22 -2.24 -4.81 -3.79 -3.89 -4.99 -3.34 -3.42 -2.38 -4.6 -2.05 -4.61 -4.71 -4.63 -7.26 -3.72 -3.16 -3.5 -5.36 -4.1 -6.27 -3.57 -0.06 -4.07 -4.82 -3.35 0.65 -4.26 -0.75 -5.06 -2.71 -3.19 -3.84
AAL19424 (rpmJ2)
3.42 3.32 -0.82 -2.76 -0.95 -1.83 1.51 -2.14 -3.68 -2.91 -3.34 - -0.95 - - - - - - - - - - 0.85 1.62 - -0.96 -0.03 - -1.78 - -2.39 - - - -1.99 2.24 -2.36 -0.23
AAL19425 (ylaC)
1.72 0.63 1.44 -1.0 -1.52 -2.26 0.8 -0.35 -1.68 -0.9 -0.96 -1.56 1.68 0.91 -1.97 0.42 -0.32 -0.42 -0.34 0.31 -1.57 1.07 0.14 -0.37 0.53 -1.44 -2.06 -0.89 -2.95 -2.82 0.16 0.34 -2.32 0.68 -0.13 0.43 -0.46 -0.36 -0.35
AAL19436 (ybaN)
0.53 0.97 -0.15 -1.11 -1.34 -0.73 0.4 0.51 -1.01 -1.22 -0.37 -1.61 0.14 1.36 -2.3 -0.5 -1.52 -0.93 -1.4 -0.87 1.04 2.07 -2.45 0.92 0.56 -0.07 -0.13 -0.54 -0.53 -2.89 -1.04 0.61 -1.07 -2.82 -1.07 0.26 1.02 -1.24 1.09
AAL19536 (fepA)
1.64 1.54 -2.01 -0.52 -3.69 0.64 2.44 2.11 -2.92 -3.79 -1.53 -2.27 -2.32 2.65 -3.23 -0.04 -2.49 -2.74 -2.82 -2.48 -0.36 1.78 -3.51 -0.28 -1.29 -1.37 0.34 -3.05 -3.33 -5.22 -3.44 -2.6 -3.57 -3.11 -2.87 -0.89 1.41 -3.15 -1.54
AAL19537 (fes)
0.51 1.97 -2.18 -2.43 -4.99 -0.32 1.43 2.07 -2.6 -4.49 -0.64 -5.27 -3.24 2.68 -3.36 -0.5 -1.75 -2.65 -2.49 -2.31 1.55 2.43 -6.9 -0.76 0.12 -1.0 0.32 -1.19 -3.05 -5.74 -4.6 -1.59 -4.73 -5.7 -1.88 -0.05 0.8 -3.87 -0.49
AAL19538 (ybdZ)
1.53 2.09 -2.65 -0.32 -5.72 1.92 1.3 1.62 -3.65 -5.69 -1.91 -4.21 -4.17 2.39 -5.23 -0.04 -3.97 -6.3 -5.14 -4.82 0.64 2.82 -7.11 -1.17 -0.03 -1.21 0.22 -2.72 -2.54 -5.39 -5.23 -4.81 -4.85 -8.61 -3.56 -0.4 0.74 -4.06 -4.58
AAL19539 (entF)
0.67 1.56 -1.92 -1.66 -3.8 2.92 0.81 1.77 -2.55 -3.81 -1.47 -3.79 -2.73 2.49 -4.36 -0.23 -2.76 -3.51 -3.21 -3.03 1.01 2.1 -5.33 -0.39 -0.37 -1.65 0.15 -2.13 -1.95 -5.13 -4.07 -3.45 -3.64 -4.92 -3.28 -0.36 1.12 -3.01 -3.6
AAL19545 (fepB)
1.63 0.85 -0.62 -1.7 -2.83 -0.09 0.55 1.88 -1.32 -2.54 0.05 -3.33 -0.75 2.84 -4.06 -0.87 -1.18 -2.04 -1.88 -2.03 0.42 1.19 -4.94 0.02 -0.02 0.08 0.22 -0.15 -1.36 -2.43 -2.41 -0.72 -2.45 -4.31 -1.3 0.52 1.01 -2.26 0.27
AAL19546 (entC)
1.47 1.56 -2.29 -1.33 -3.51 0.27 1.36 2.2 -1.59 -4.35 0.56 -4.34 -3.09 3.05 -3.94 -1.24 -1.44 -3.32 -3.54 -3.18 -1.57 0.06 -6.15 0.52 -1.92 -0.79 1.1 -2.18 -2.93 -4.42 -4.02 -2.86 -3.87 -6.06 -2.04 1.41 1.52 -2.95 -1.41
AAL19547 (entE)
1.56 1.65 -1.58 -0.76 -3.61 1.79 1.27 2.16 -1.81 -3.48 -0.42 -3.97 -2.3 2.8 -3.99 -0.9 -1.24 -3.65 -3.38 -3.14 -1.77 -0.01 -5.68 0.46 -2.03 -1.01 1.03 -2.21 -3.05 -3.61 -4.04 -2.75 -3.71 -5.58 -1.53 1.16 1.47 -2.1 -2.88
AAL19548 (entB)
1.2 1.3 -1.08 -0.94 -3.14 3.0 1.12 1.66 -2.61 -2.96 -2.08 -4.25 -1.53 2.32 -3.31 -0.35 -1.51 -3.04 -3.16 -2.91 -1.72 -0.56 -5.61 0.68 -2.09 -1.29 0.94 -2.59 -2.61 -5.28 -4.4 -2.35 -3.85 -4.76 -1.95 1.39 1.61 -1.72 -2.83
AAL19549 (entA)
1.59 1.48 -0.99 -0.76 -2.55 2.69 0.45 1.69 -2.34 -2.97 -2.02 -3.28 -1.3 2.48 -4.28 -0.73 -1.91 -3.62 -3.06 -3.29 -1.13 -0.51 -5.48 0.39 -1.51 -1.41 1.2 -1.99 -2.09 -5.32 -4.0 -1.84 -3.33 -5.25 -2.57 1.66 1.39 -1.34 -2.3
AAL19550 (ybdB)
2.4 0.92 -0.83 0.45 -2.32 2.21 1.33 1.91 -2.33 -2.76 -2.21 -3.49 -1.59 2.46 -2.56 -1.6 -1.58 -2.55 -2.69 -2.3 -1.98 -0.88 -6.61 0.06 -2.07 -1.9 0.75 -2.35 -2.36 -4.51 -3.97 -1.81 -3.76 -5.36 -1.7 1.39 1.33 -1.33 -2.35
AAL19729 (ybhB)
-0.54 0.55 1.2 -0.56 -1.0 2.17 0.13 0.09 -1.31 -0.48 -1.37 -0.97 1.12 0.57 -0.16 -1.51 -1.32 -0.8 -1.37 -0.93 1.69 0.69 -4.06 -1.35 1.74 0.49 0.52 -0.41 -0.47 -2.71 -1.72 -0.96 -1.05 -2.49 -1.88 -0.18 -0.39 -0.64 -0.36
AAL19798 (yliJ)
-1.05 0.17 0.32 -0.42 -1.35 0.01 0.92 -0.02 -0.6 0.29 -0.45 -1.55 -0.17 0.17 0.87 -1.36 0.02 0.78 0.45 0.82 -0.53 -0.61 -2.36 -0.13 0.16 0.38 1.36 0.46 -0.48 -3.39 0.21 -0.56 -0.73 -1.72 -0.48 1.03 0.73 -0.78 -0.52
AAL19894 (lrp)
0.26 0.23 -0.19 0.21 -1.22 0.12 0.59 0.93 -0.71 0.23 -0.39 -0.68 -0.84 1.37 1.64 -0.66 1.63 0.32 0.01 0.38 -1.99 0.22 -0.26 -0.84 -2.06 -0.34 -0.63 -0.08 -0.42 -1.9 -1.11 -0.93 -0.33 -0.74 0.68 -0.54 -0.75 -0.8 -0.58
AAL19930 (ycbK)
-1.42 0.21 -0.04 -0.88 -0.5 -0.95 1.34 0.76 -1.11 0.48 -0.92 -0.85 0.12 1.37 0.64 -0.5 -0.5 0.68 0.83 1.07 -0.51 0.92 0.51 -0.38 -0.47 -0.33 -0.74 -0.18 -0.98 -3.78 -0.37 -0.96 -1.18 -0.09 0.43 -1.26 0.03 -0.42 -0.18
AAL20133 (fhuE)
1.02 1.22 -1.29 -1.39 -1.79 0.76 0.83 1.52 -1.79 -3.13 -0.93 -2.86 -1.0 2.05 -3.4 0.22 -2.72 -2.17 -2.35 -1.94 0.63 2.32 -2.41 0.85 -0.35 -1.44 0.61 -1.53 -2.12 -4.1 -2.43 -1.59 -2.13 -2.04 -2.13 -1.94 2.32 -2.31 -0.14
AAL20188 (STM1263)
3.73 1.75 -2.08 1.18 -1.9 -4.34 -2.89 -1.29 -3.24 -3.14 -2.61 -3.09 -2.12 -2.43 -1.95 -3.41 0.55 -2.55 -2.51 -2.46 -4.22 -2.29 -3.31 -1.15 -3.56 -1.37 -3.77 -2.87 2.22 -3.0 -5.19 -2.51 2.59 -3.11 0.86 -3.36 -0.39 -2.04 -2.23
AAL20268 (nlpC)
0.16 0.71 -0.11 -0.48 -0.18 -1.12 0.37 0.2 -0.69 0.17 -0.43 -1.73 0.77 0.45 0.79 -1.15 -0.67 0.6 -0.17 0.68 0.09 1.52 -0.83 0.04 0.16 1.32 -1.44 -0.49 -0.09 -1.18 -1.19 -1.33 -0.12 -1.82 -1.04 -1.62 0.47 0.36 0.02
AAL20283 (aroD)
-0.55 0.54 0.52 0.09 -0.47 -0.68 0.14 0.59 -0.12 0.24 -0.02 -0.86 -0.11 0.45 0.95 -0.5 0.7 0.12 0.12 0.41 -1.33 0.31 -0.75 -0.76 -0.98 0.63 0.08 0.01 0.52 -2.31 -1.03 -0.27 0.47 -0.79 0.41 -0.5 -0.23 -0.04 -0.03
AAL20504 (STM1586)
1.4 -0.12 -1.18 -0.4 -2.92 3.59 0.54 0.97 -2.13 -2.81 -1.14 -2.78 -1.29 2.01 -3.74 -0.23 -1.67 -1.66 -1.69 -1.36 -0.7 -0.92 -2.79 -0.63 -1.35 -0.45 0.28 -0.66 -1.25 -2.7 -2.24 -1.46 -2.4 -2.45 -1.9 0.27 0.98 -1.75 -0.34
AAL20521 (yncJ)
-1.57 0.03 -3.62 -2.68 -3.87 1.02 -0.55 1.13 -3.44 -2.63 -2.15 -4.66 -3.83 -1.48 -0.51 -1.0 -0.2 0.61 -0.53 0.86 2.98 1.11 -0.38 0.14 2.68 -2.34 -2.89 -0.19 -2.06 -2.87 1.09 -4.37 -2.9 -2.09 0.24 -3.8 0.67 -5.54 -3.79
AAL20526 (tehB)
-1.1 -0.04 0.57 -0.2 0.24 -0.5 0.8 0.1 -0.67 1.03 -0.45 -0.6 0.12 0.36 0.52 0.25 0.95 -0.18 -0.41 -0.03 -1.18 -0.62 0.38 -0.66 -0.98 -0.09 -0.32 0.23 -0.55 -2.41 -0.99 -0.06 -0.82 0.42 1.02 -0.86 0.11 0.58 0.13
AAL20556 (STM1638)
-0.27 0.05 -0.67 0.06 -0.15 -0.45 -0.01 1.68 -1.08 0.49 -0.64 -1.36 -1.28 2.23 0.29 -2.05 0.72 -0.02 0.3 0.51 -4.94 -0.74 -1.2 -0.47 -3.53 0.98 -1.08 -1.33 0.29 -1.67 -2.09 -0.35 0.12 -1.38 1.23 -1.36 0.26 0.22 0.0
AAL20567 (STM1649)
0.44 -1.24 1.03 -2.02 0.51 -0.01 -0.53 -2.66 0.58 0.42 0.4 -0.28 1.22 -2.71 - - - - - - 2.75 -5.56 - 0.16 1.26 -5.65 0.75 1.08 -5.23 -0.97 0.65 0.25 -4.15 -7.83 - 1.16 0.27 0.62 0.86
AAL20655 (tonB)
-0.25 0.5 -0.75 -1.36 -2.03 -0.57 1.96 1.12 -0.76 -1.57 0.27 -1.98 -0.28 2.12 -1.87 -1.72 -0.14 0.95 0.86 1.19 -0.38 1.18 -3.44 -0.84 -0.75 -0.1 -0.85 -1.29 -1.17 -3.45 -1.51 -0.3 -1.12 -3.07 0.84 -0.92 0.11 -1.66 0.62
AAL20723 (STM1808)
-1.08 -1.13 -0.27 -1.07 -1.68 -2.9 -0.17 -1.15 -0.83 1.54 -0.27 -2.13 -0.13 -1.18 -1.05 -1.23 -1.66 -1.11 -1.17 -0.74 -3.64 -2.02 -2.21 0.33 -2.4 -1.47 -0.75 -0.46 -2.11 -4.35 -1.98 -0.57 -1.84 -0.29 -1.17 -1.62 4.2 -0.98 -0.58
AAL20806 (yebA)
0.72 0.93 -0.76 -0.15 -0.43 -1.93 0.09 0.04 -0.76 -0.18 -0.55 -0.59 -0.21 0.25 0.69 -0.4 0.03 0.7 1.07 1.14 -1.19 -0.13 0.38 0.07 -1.59 -0.39 -0.62 0.27 0.23 -2.87 -0.32 -0.93 0.51 -0.24 0.74 -0.69 0.26 -0.75 0.03
AAL20807 (znuA)
1.99 1.97 -1.09 0.4 -0.66 -2.05 -0.68 0.68 -1.03 -0.46 -0.56 -1.32 0.02 0.8 0.14 -1.1 0.07 -0.25 -0.17 0.12 -2.55 -0.06 -0.45 -0.36 -2.46 -0.4 -1.19 -0.29 0.78 -3.4 -1.22 -0.35 1.46 -0.85 0.6 -1.0 -0.02 -0.64 -0.09
AAL20808 (znuC)
0.43 0.97 0.26 0.21 -0.08 -2.39 -0.92 0.85 -0.56 -0.33 -0.27 -0.15 0.75 0.54 -0.52 -0.56 -1.22 -0.33 -0.35 0.02 -1.69 -0.14 -0.13 -0.49 -1.28 -0.37 -0.87 0.02 1.27 -2.43 0.17 0.59 1.69 -0.25 -0.81 -0.84 -0.23 0.24 0.13
AAL20984 (udg)
0.28 1.24 0.17 -0.48 -1.42 0.94 0.12 0.19 -2.4 -1.08 -1.93 -3.35 -1.47 0.34 0.32 1.08 -0.33 0.29 0.63 0.52 0.3 2.26 -0.47 -0.76 0.69 -0.35 -0.75 0.25 -0.13 -1.11 -1.32 -1.43 0.17 -1.24 -0.83 -1.56 0.44 -3.22 -1.07
AAL21103 (cirA)
2.42 0.63 -2.34 -1.16 -3.45 1.5 -0.74 2.53 -2.07 -3.57 -0.32 -3.84 -2.51 3.34 -4.83 0.11 -2.77 -3.09 -2.97 -2.83 -0.64 -1.19 -4.17 -0.01 -1.41 -0.98 0.73 -2.77 -2.95 -4.63 -3.38 -3.03 -3.08 -3.79 -2.95 -0.77 1.28 -2.88 -1.47
AAL21450 (hmpA)
-1.61 -0.19 -0.36 0.01 -0.74 0.08 -0.87 -0.23 -0.53 3.92 -0.67 -1.83 -0.7 0.59 -0.98 -2.97 -2.04 -2.02 -1.83 -1.67 -3.16 -0.27 -2.5 -0.44 -2.45 0.28 -1.21 -0.2 -1.46 -3.17 -2.36 0.07 -1.57 -3.81 -2.18 -1.05 1.68 -0.06 -0.24
AAL21740 (ygbA)
-0.44 0.26 -0.15 -0.25 -2.03 -3.01 0.89 -0.08 -1.29 1.91 -0.39 -1.28 -0.32 -1.42 -1.59 -2.29 -1.05 -0.04 -0.11 0.14 -1.03 0.7 -1.9 0.5 -0.69 -1.85 -1.75 0.45 -0.81 -3.16 -0.38 -1.12 -0.85 -2.18 -1.32 -2.21 3.46 -1.29 -0.94
AAL21843 (STM2963)
-0.01 0.28 0.61 -0.0 0.03 -1.34 0.04 0.88 -0.21 -0.07 -0.53 -0.32 -0.46 1.33 1.12 -1.41 1.1 -0.36 -0.68 -0.3 -1.15 -0.15 -1.71 -0.87 -0.4 0.56 -0.45 -0.05 -0.39 -2.39 -1.45 0.36 -0.55 -1.95 1.53 0.27 -1.26 0.15 0.31
AAL22032 (exbD)
1.18 0.31 -1.24 -0.63 -1.32 -1.25 1.37 0.98 -1.56 -2.99 -0.51 -3.94 0.17 1.7 -1.81 -0.2 0.49 0.15 0.16 0.2 -0.04 0.17 -1.96 -0.09 -0.35 -0.38 -0.15 -0.46 -0.36 -1.19 -1.79 0.21 -1.66 -1.98 1.12 -0.43 1.04 -1.61 1.33
AAL22033 (exbB)
0.89 -0.31 -0.73 -0.45 -1.25 -1.35 1.64 1.27 -1.89 -2.37 -0.71 -3.67 0.44 2.01 -1.83 0.01 -0.16 0.15 0.22 0.48 -0.03 -0.31 -1.6 -0.61 -0.07 -0.17 -0.54 -0.14 -0.12 -2.64 -1.28 0.84 -1.41 -1.87 0.27 -0.64 0.57 -0.55 1.09
AAL22307 (bfd)
0.83 2.16 -1.01 -2.54 -4.44 -1.38 1.92 -0.89 -2.47 -5.2 -0.42 -5.21 -1.08 0.04 -6.26 -0.1 -1.86 -0.65 -1.02 -0.31 2.04 3.08 -3.9 -1.37 0.24 -1.85 -1.5 -1.34 -3.65 0.42 -2.94 -0.29 -4.23 -3.98 -1.08 -1.3 0.9 -3.1 0.18
AAL22364 (ompR)
-1.08 0.2 0.3 -0.02 -0.31 -0.43 0.62 0.05 -0.01 0.58 0.14 -0.2 0.2 -0.47 -0.31 -0.72 0.22 0.22 0.17 0.45 -0.73 -0.02 -1.31 0.07 -0.5 0.37 0.92 0.22 -0.65 -2.25 -0.95 -0.06 -0.78 -1.4 0.03 1.11 0.77 -0.22 0.42
AAL22367 (feoA)
1.16 0.08 -0.57 -0.49 -1.52 0.23 0.99 0.18 -2.48 -1.4 -1.65 -2.74 -0.08 -0.01 -3.17 0.95 -1.56 -0.85 -0.9 -0.58 1.96 -0.26 -1.37 -1.26 2.59 -1.31 -0.54 -0.15 0.87 -4.26 -1.48 0.52 -0.35 -1.45 -0.82 -1.56 0.69 -1.18 0.36
AAL22368 (feoB)
-0.25 0.23 -0.03 -0.55 -0.26 1.29 -0.36 0.89 -1.38 -1.07 -1.21 -2.67 0.48 0.97 -2.89 0.54 -2.1 -0.77 -0.58 -0.64 1.02 0.84 -2.15 -1.16 0.91 -0.43 -0.05 -0.09 0.88 -3.33 -0.52 1.16 -0.33 -2.37 -1.4 -1.05 0.87 -0.35 1.34
AAL22689 (dgoR)
-1.02 0.28 0.29 0.43 -0.08 0.0 -0.14 0.64 -0.49 0.21 -0.06 -1.37 -0.43 0.51 1.69 -0.32 0.91 -0.08 0.16 0.35 -1.97 -0.94 -0.94 -0.78 -0.65 -0.18 -0.64 0.11 -0.75 -2.83 0.02 0.39 -1.1 -0.68 1.17 0.14 -0.97 0.55 0.09
AAL23219 (ytfE)
1.22 0.19 -0.42 -0.43 -0.62 -3.52 -1.18 -0.3 -0.31 3.44 -0.06 -1.55 0.04 -0.33 -0.56 -1.79 -0.74 -1.53 -1.41 -1.15 -2.32 0.32 -2.26 0.48 -1.81 -1.24 -0.92 -0.57 -1.22 -3.27 -1.28 -0.15 -1.0 -2.08 0.97 -1.16 1.57 -0.48 -0.22
AAL23273 (treC)
-2.53 -0.8 -2.23 -2.06 -1.69 -3.0 -2.7 -1.98 -1.94 -1.55 -1.51 -2.06 -1.85 -2.34 -1.13 -0.53 -2.68 -2.71 -2.3 -2.33 -3.28 -1.45 3.72 1.69 -2.8 -2.12 1.36 -1.39 -2.05 -5.14 -1.13 -1.7 -2.69 1.21 -1.95 2.49 1.62 -1.64 -1.11
AAL23368 (fhuF)
1.21 1.09 -0.73 -2.35 -2.92 -0.21 1.52 1.43 -1.96 -2.94 -0.15 -4.54 -0.95 2.72 -3.98 -1.04 -1.34 -1.09 -1.22 -0.92 0.91 1.93 -4.69 -0.61 0.15 -0.11 -0.64 -0.67 -1.91 -3.35 -2.62 0.0 -2.77 -4.26 0.17 -0.37 0.69 -2.28 0.35

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.