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Heatmap: Cluster_21 (HCCA)

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(Showing raw values)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL23444 (PSLT002)
 20.0 89.95 36.36 11.03 16.68 10.92 17.41 22.38 5.5 28.02 7.98 6.35 44.2 20.59 15.08 7.56 9.78 25.02 26.6 32.53 15.73 56.6 3.97 2.22 24.45 12.09 0.0 26.39 14.69 1.6 11.96 21.16 12.17 9.33 13.0 0.0 2.96 24.88 38.66
AAL23450 (PSLT020)
 36.89 457.18 33.43 15.77 26.07 10.79 52.7 46.21 17.73 20.47 47.38 15.27 68.79 37.95 36.24 20.76 21.13 36.89 26.19 46.25 14.53 122.0 16.9 0.68 53.35 24.69 0.0 46.31 7.15 10.14 35.81 47.44 9.13 10.84 45.88 0.0 1.07 36.18 43.72
AAL23460 (PSLT036)
 43.31 80.96 65.52 16.17 15.93 7.02 43.24 35.34 8.06 25.12 13.66 21.31 73.45 35.27 10.85 13.05 18.62 17.6 20.38 27.16 29.63 47.78 5.82 9.43 62.84 20.89 0.0 57.05 35.41 9.52 16.01 35.42 36.56 14.48 9.94 0.0 11.33 28.7 45.59
AAL23461 (PSLT042)
 10.92 36.58 9.04 7.19 6.4 6.53 12.98 11.64 6.51 11.29 13.27 4.09 20.65 13.39 5.96 21.6 3.15 15.02 12.17 17.78 12.52 37.99 8.44 2.23 12.6 6.27 0.0 20.81 12.62 2.21 13.9 9.44 12.1 19.65 4.41 0.0 2.43 3.6 14.82
AAL23466 (PSLT056)
 1.83 26.65 1.2 1.91 0.59 0.44 1.13 2.52 0.92 0.7 1.01 0.34 2.15 1.67 0.24 0.0 0.41 1.4 1.03 1.16 2.22 4.6 0.0 0.0 3.15 0.63 0.0 0.86 0.86 0.24 0.27 0.71 1.44 0.0 1.97 0.0 0.0 0.78 0.49
AAL23467 (PSLT057)
 2.39 43.76 2.5 2.69 0.94 0.76 0.49 2.23 0.52 0.53 0.55 0.11 2.91 2.04 0.79 0.0 0.33 0.55 1.16 1.14 2.15 1.1 0.0 0.0 3.91 0.43 0.0 1.44 1.16 0.17 0.65 0.65 2.03 0.0 0.83 0.0 0.0 1.44 1.26
AAL23468 (PSLT059)
 2.61 42.12 2.71 2.6 1.12 0.67 0.75 3.98 2.09 2.23 3.18 1.31 2.88 4.67 1.34 0.0 0.74 1.24 1.12 1.27 2.27 3.28 0.0 0.0 4.68 1.85 0.0 1.64 2.66 0.11 2.63 1.61 2.95 0.0 1.49 0.0 0.0 1.41 3.03
AAL23469 (PSLT060)
 3.6 111.35 7.44 3.1 0.48 0.73 0.24 11.7 3.32 4.19 4.23 2.02 4.96 16.88 0.0 0.0 1.07 0.74 0.0 0.73 0.0 10.92 0.0 0.0 3.51 7.21 0.0 2.92 4.26 1.02 10.12 1.62 4.66 0.0 4.24 0.0 0.0 5.04 8.73
AAL23470 (PSLT061)
 2.7 31.25 14.33 4.49 2.62 13.1 2.36 7.09 1.37 5.71 1.36 1.41 7.94 9.98 2.54 0.0 3.05 3.81 3.72 4.31 10.88 5.78 0.0 0.0 5.57 3.96 0.0 1.63 4.17 0.34 2.08 4.93 3.67 0.0 8.55 0.0 0.0 6.17 3.52
AAL23471 (PSLT062)
 3.03 26.15 7.89 2.81 3.59 2.41 2.07 4.9 1.96 3.41 2.56 2.2 8.86 6.49 0.52 0.0 0.82 1.72 1.31 1.77 4.32 7.33 0.0 0.0 7.13 4.93 0.0 4.98 2.63 1.71 3.09 4.29 2.38 0.0 2.86 0.0 0.0 3.97 4.59
AAL23472 (PSLT063)
 8.79 42.37 17.94 8.43 8.42 10.77 8.01 10.33 2.14 6.5 2.59 3.17 16.45 8.07 5.7 0.0 8.59 6.02 5.94 6.58 9.61 9.79 0.0 0.0 10.59 9.69 0.0 6.73 5.02 0.8 5.3 10.46 4.81 0.0 18.5 0.0 0.0 14.43 8.06
AAL23473 (PSLT064)
 18.65 84.05 9.79 9.48 5.05 4.67 45.0 19.72 3.01 13.05 5.49 16.61 18.0 30.94 14.96 0.0 10.89 11.74 14.33 16.45 23.89 73.53 0.0 0.0 27.29 13.04 0.0 12.5 5.97 5.44 16.8 7.97 6.44 0.0 16.97 0.0 0.0 9.41 14.16
AAL23474 (ssbB)
 3.66 52.39 3.85 5.04 2.1 1.29 1.77 3.67 1.31 5.01 2.9 1.15 3.33 1.24 2.58 0.0 1.43 2.93 3.57 3.82 2.13 5.71 0.0 0.0 5.65 1.87 0.0 4.33 5.95 0.31 0.81 2.22 11.08 0.0 16.04 0.0 0.0 3.1 3.25
AAL23475 (PSLT067)
 36.05 82.82 23.23 12.97 12.03 5.41 19.53 20.84 25.81 52.4 42.26 12.45 30.02 12.71 4.04 0.0 9.41 3.63 8.4 9.53 16.04 75.72 0.0 0.0 30.4 8.38 0.0 21.5 30.6 1.97 5.94 13.61 35.41 0.0 24.91 0.0 0.0 15.74 16.33
AAL23476 (PSLT068)
 1.81 29.74 1.73 2.82 0.61 0.63 0.86 2.29 0.58 2.36 1.0 0.58 1.35 2.14 1.59 0.1 0.9 2.03 2.1 2.39 1.79 6.23 0.06 0.28 2.82 1.38 0.0 1.63 2.71 0.26 0.75 0.65 4.33 0.04 2.09 0.0 0.73 1.37 1.32
AAL23477 (psiB)
 4.74 43.89 8.12 5.77 5.01 1.34 3.57 10.4 3.65 12.92 5.58 7.16 12.05 12.94 4.28 0.1 3.49 4.75 5.0 6.61 4.64 12.07 0.06 0.13 5.61 6.45 0.0 8.64 9.31 1.18 8.33 6.99 9.7 0.03 5.57 0.0 0.17 10.5 13.22
AAL23478 (psiA)
 3.9 25.79 8.4 5.74 5.5 2.6 3.12 9.54 3.43 8.69 4.99 4.16 12.43 15.29 3.39 1.29 4.37 5.75 4.96 6.97 8.2 6.66 0.52 4.48 6.6 7.74 0.02 7.22 9.22 0.74 5.36 5.14 10.37 0.81 6.74 0.0 3.3 8.49 10.63
AAL23480 (traJ)
 3.59 20.57 0.46 1.63 0.66 0.41 1.25 6.73 0.79 0.78 3.07 0.04 1.99 5.77 1.4 5.63 6.2 1.9 2.19 2.69 1.94 3.71 9.3 0.91 4.73 0.88 0.0 1.31 3.37 1.16 0.3 0.58 3.95 2.87 1.18 0.0 1.7 0.93 1.54
AAL23482 (traA)
 11.75 54.44 18.27 18.82 5.11 25.71 2.6 29.86 1.5 12.37 1.99 4.19 6.91 27.24 2.68 9.74 2.96 7.86 12.11 12.31 7.84 3.26 3.35 2.79 10.94 8.55 0.0 7.73 56.35 3.59 2.84 9.05 52.33 2.43 0.9 0.0 3.41 6.59 3.1
AAL23483 (traL)
 4.45 48.46 3.41 7.06 1.54 2.76 3.19 7.07 5.48 3.71 14.98 2.44 2.7 7.67 1.69 2.18 1.78 5.05 7.09 8.89 1.67 10.83 0.39 0.93 8.29 3.4 0.0 4.57 15.69 0.45 1.45 2.78 16.31 1.23 0.13 0.0 1.51 1.64 2.74
AAL23484 (traE)
 2.28 29.57 2.67 3.18 1.32 0.77 1.81 7.16 2.05 4.03 2.95 1.11 3.09 10.01 2.27 1.37 1.4 3.41 3.29 3.9 1.75 4.38 0.39 0.62 4.46 4.75 0.0 3.74 6.6 1.51 2.47 1.66 7.66 0.62 0.51 0.0 1.03 2.49 1.44
AAL23485 (traK)
 2.99 28.34 6.73 6.0 2.88 1.05 2.11 8.42 2.02 6.61 2.52 2.02 5.23 13.98 4.73 0.49 3.78 10.52 7.16 9.22 3.56 6.47 0.02 0.87 6.08 5.62 0.0 3.8 10.2 0.67 4.25 4.16 9.18 0.32 1.74 0.0 1.35 4.68 3.47
AAL23486 (traB)
 2.78 39.34 5.5 4.14 2.27 0.79 1.23 6.82 1.92 2.57 2.59 1.75 4.67 9.7 1.87 0.77 1.77 3.4 3.92 4.14 1.98 2.4 0.3 0.73 3.89 2.95 0.0 2.58 6.82 0.19 1.92 2.73 6.75 0.34 2.68 0.0 1.15 3.92 2.84
AAL23487 (traP)
 3.58 30.98 7.69 3.71 1.76 1.1 2.29 5.84 1.83 3.62 2.68 2.06 2.47 7.74 2.58 4.0 4.78 6.02 4.22 5.45 0.47 6.54 1.21 2.05 3.9 3.19 0.0 2.21 4.6 0.73 1.74 2.66 5.38 3.6 1.44 0.0 4.09 4.16 0.94
AAL23489 (traV)
 4.37 30.2 27.17 9.22 6.51 11.01 3.45 11.93 3.39 11.46 4.38 3.27 9.22 17.68 2.84 4.25 5.98 7.74 8.49 8.22 3.22 13.88 0.58 4.08 11.28 15.5 0.0 7.29 14.38 1.77 5.31 6.94 14.86 1.61 3.95 0.0 5.27 9.38 3.42
AAL23490 (traR)
 9.05 87.87 11.15 8.79 5.29 11.65 1.09 8.99 5.97 7.15 11.24 2.67 6.5 15.81 2.45 0.0 0.96 3.09 2.17 1.36 1.36 12.37 0.0 0.0 13.26 13.04 0.0 5.56 10.15 2.13 2.07 5.92 12.41 0.0 0.0 0.0 0.0 8.76 4.76
AAL23491 (PSLT087)
 2.27 29.93 6.91 4.86 2.25 6.64 2.97 5.94 2.22 3.66 3.21 0.56 2.99 10.7 1.42 0.0 1.97 6.9 6.93 7.42 1.83 2.64 0.0 0.0 5.97 7.31 0.0 2.47 5.58 0.29 1.77 2.39 5.94 0.0 1.27 0.0 0.0 5.17 0.82
AAL23492 (traC)
 3.37 33.75 8.45 5.08 3.5 5.04 4.39 8.42 2.87 3.92 3.19 1.75 6.94 10.24 6.58 0.0 2.36 7.76 6.64 8.38 2.81 5.55 0.0 0.0 5.58 5.62 0.0 3.53 4.79 0.36 3.27 4.53 5.55 0.0 3.93 0.0 0.0 5.09 4.65
AAL23493 (trbI)
 3.21 49.78 8.43 6.58 4.14 7.61 2.47 9.05 1.38 3.98 1.71 2.37 5.44 13.13 1.48 0.0 5.78 8.63 8.69 7.98 4.02 3.7 0.0 0.0 8.67 5.99 0.0 2.6 5.83 1.29 1.52 3.16 7.58 0.0 9.57 0.0 0.0 6.83 3.3
AAL23494 (traW)
 2.61 32.33 7.13 6.09 3.91 7.49 2.56 7.43 1.99 3.48 1.98 2.3 4.57 11.62 5.79 0.0 2.83 5.19 6.51 7.5 3.83 9.23 0.0 0.0 5.58 7.27 0.0 2.5 4.95 0.34 1.5 3.08 6.93 0.0 4.92 0.0 0.0 5.69 3.52
AAL23495 (traU)
 2.92 32.01 8.83 4.52 4.73 6.94 2.32 7.5 2.52 4.18 2.14 2.98 5.33 12.79 3.42 0.0 2.09 3.73 3.89 4.18 4.19 8.37 0.0 0.0 6.1 5.75 0.0 3.46 5.1 0.61 1.78 5.19 5.66 0.0 3.25 0.0 0.0 4.97 4.21
AAL23496 (PSLT093)
 5.95 69.46 11.29 8.24 5.27 8.61 12.84 12.8 1.88 6.35 1.44 3.42 8.16 18.71 8.83 0.0 6.07 13.69 10.15 12.41 1.72 16.73 0.0 0.0 10.13 7.15 0.0 5.84 7.14 2.34 5.9 5.79 5.86 0.0 6.89 0.0 0.0 6.33 7.04
AAL23497 (trbC)
 3.81 34.16 15.99 6.67 6.95 7.01 5.19 11.53 2.74 8.21 2.25 4.68 11.47 18.87 5.04 0.0 3.81 7.47 5.58 7.51 7.82 9.71 0.0 0.0 8.55 8.26 0.0 7.27 9.11 0.48 8.13 7.75 7.84 0.0 3.45 0.0 0.0 8.87 8.1
AAL23498 (traN)
 5.6 52.52 15.28 7.28 5.27 5.93 10.25 13.93 2.83 8.96 1.98 3.42 11.96 19.62 11.83 0.02 6.56 14.46 13.84 16.42 8.15 12.1 0.0 0.0 11.98 6.64 0.0 6.76 6.49 0.51 5.2 6.3 6.93 0.0 8.82 0.0 0.0 9.33 8.86
AAL23499 (trbE)
 24.85 197.69 120.54 18.74 45.16 22.22 91.21 66.97 11.23 29.95 11.48 5.32 115.92 73.62 8.76 0.0 34.98 41.51 15.36 24.21 50.1 27.26 0.0 0.0 58.46 21.98 0.0 18.08 12.19 1.52 37.86 50.21 16.4 0.0 44.32 0.0 0.0 116.34 39.39
AAL23500 (traF)
 4.7 28.8 20.11 5.0 5.58 7.69 4.3 13.53 4.26 7.78 6.08 2.7 17.23 21.56 2.22 0.02 1.99 3.91 4.23 5.41 10.36 11.82 0.0 0.0 10.68 9.69 0.0 6.99 8.5 1.08 7.04 7.38 9.02 0.0 1.2 0.0 0.0 9.97 8.63
AAL23501 (traQ)
 5.34 56.86 17.42 6.58 4.39 4.04 5.83 12.34 3.27 8.82 5.9 1.79 11.4 18.34 6.16 0.06 5.2 12.47 13.09 18.19 14.72 13.0 0.0 0.0 34.14 15.39 0.0 7.7 9.5 0.57 10.19 4.85 8.18 0.0 1.69 0.0 0.0 10.47 3.73
AAL23502 (trbB)
 5.2 66.89 31.07 8.47 7.38 20.58 7.26 14.51 4.63 10.39 6.45 2.01 20.59 22.21 10.29 0.02 4.73 16.4 16.53 18.92 12.74 15.09 0.0 0.0 23.8 20.65 0.0 8.66 9.91 0.45 6.27 6.82 7.92 0.0 4.39 0.0 0.0 15.88 7.78
AAL23503 (traH)
 6.85 38.05 30.23 8.83 7.5 17.62 8.0 13.49 4.42 12.11 4.92 4.97 18.57 22.25 14.03 0.0 4.57 16.76 16.6 18.68 10.15 15.83 0.0 0.0 12.48 16.4 0.0 7.42 8.78 1.59 7.95 7.83 7.83 0.0 4.81 0.0 0.0 17.27 8.65
AAL23504 (traG)
 15.11 53.51 50.46 16.8 24.56 20.42 24.82 31.83 8.38 24.09 8.05 9.11 47.26 42.74 39.28 0.0 15.17 33.98 30.47 38.47 17.7 25.6 0.0 0.0 17.11 19.33 0.0 19.39 19.41 2.99 18.51 28.09 16.42 0.0 17.46 0.0 0.0 37.46 52.32
AAL23507 (traD)
 5.73 33.23 9.18 7.47 4.89 7.26 9.22 12.32 7.27 8.2 16.12 1.73 10.2 20.95 9.77 0.14 8.16 33.01 30.64 32.24 5.73 16.62 0.0 0.0 9.21 5.66 0.0 7.07 10.66 0.79 6.67 6.99 9.57 0.0 12.87 0.0 0.0 9.19 14.94
AAL23509 (traI)
 8.62 46.72 18.18 12.46 13.09 12.04 9.9 25.46 9.16 15.63 9.12 12.5 23.89 43.1 15.08 0.01 14.07 19.95 21.6 22.37 14.88 24.04 0.0 0.0 13.53 17.27 0.0 12.37 16.16 1.54 12.36 13.47 15.75 0.0 15.93 0.0 0.0 13.8 20.88
AAL23510 (traX)
 8.44 44.11 12.23 10.06 12.13 9.01 4.74 23.5 9.36 13.32 10.47 15.53 19.22 41.97 8.26 0.0 4.35 7.94 6.36 7.62 6.69 24.3 0.0 0.0 25.77 14.84 0.0 10.88 14.78 1.25 11.26 14.23 15.73 0.0 4.47 0.0 0.0 12.33 22.9
AAL23511 (finO)
 32.58 124.62 90.03 52.14 36.64 25.37 49.61 81.86 16.56 68.92 15.13 47.2 81.95 116.32 72.69 1.8 32.45 69.31 67.17 74.8 50.12 72.42 0.27 2.0 69.49 44.19 0.0 43.4 64.89 3.5 43.89 51.04 53.55 1.26 43.87 0.0 2.9 64.95 61.83
AAL23512 (srgC)
 12.57 65.08 24.35 12.23 26.39 4.73 29.77 32.02 7.79 17.65 10.09 5.18 34.11 29.17 19.05 16.99 23.07 22.18 25.32 28.99 10.33 58.09 5.24 2.49 16.33 16.53 0.0 17.25 15.94 5.94 13.37 18.41 13.1 14.3 21.77 0.0 3.32 29.22 29.28
AAL23515 (srgA)
 8.92 54.75 9.18 8.03 10.93 3.05 17.3 19.38 11.37 6.44 16.26 6.97 15.03 33.2 3.94 5.19 22.56 20.12 23.31 22.19 7.06 13.18 3.76 18.72 19.04 21.71 0.0 10.28 12.41 1.35 4.39 6.61 14.11 4.02 8.86 0.0 42.18 12.37 14.1
AAL23519 (orf5)
 13.7 63.77 27.22 11.79 13.9 4.33 30.95 23.05 5.9 13.46 8.66 5.76 24.65 19.65 36.28 0.0 21.24 46.44 43.94 50.86 20.21 41.91 0.0 0.0 20.56 12.57 0.0 12.03 11.01 2.07 11.95 15.16 9.66 0.0 44.37 0.0 0.0 20.63 18.43
AAL23520 (pefD)
 5.15 28.74 10.5 6.58 5.78 2.27 5.17 10.12 2.35 7.17 2.7 2.4 10.16 12.53 11.09 1.76 10.16 15.97 13.71 16.43 5.13 6.43 0.46 0.97 7.34 5.88 0.0 5.9 7.77 1.04 6.57 5.69 6.65 0.98 15.9 0.0 1.71 9.36 8.82
AAL23521 (pefC)
 2.5 30.47 5.32 3.4 3.1 1.54 2.9 5.76 2.17 4.1 2.44 2.58 6.53 8.07 5.04 0.35 2.53 9.79 7.54 9.53 2.58 5.85 0.34 0.87 4.37 3.86 0.0 3.43 2.83 0.81 2.27 3.06 3.43 0.34 3.53 0.0 1.3 4.76 5.41
AAL23523 (pefB)
 6.3 53.36 2.11 4.47 1.55 0.24 7.55 7.52 10.89 8.04 24.81 5.32 4.36 2.03 8.36 0.53 6.96 22.14 14.8 26.72 1.45 3.93 0.05 0.42 8.91 1.69 0.0 5.02 3.71 4.8 2.19 2.39 5.07 0.19 5.96 0.0 1.09 2.19 2.77
AAL23532 (spvR)
 3.89 31.15 5.44 2.72 1.48 8.62 9.17 7.48 5.95 1.57 12.11 0.3 21.41 4.16 3.76 4.57 10.13 8.91 11.16 12.81 10.06 29.13 1.0 0.49 24.59 3.6 0.0 3.74 2.05 0.89 2.42 1.29 2.37 3.49 6.16 0.0 1.2 1.87 2.74
AAL23540 (samB)
 10.74 62.85 16.29 16.24 13.3 2.82 20.68 22.59 7.76 10.99 7.51 13.65 17.36 36.75 21.79 4.38 9.04 21.31 19.31 23.83 14.01 29.36 1.8 2.41 16.83 11.06 0.0 23.36 48.09 0.8 7.71 12.32 38.27 2.14 38.15 0.0 3.29 22.43 13.02
AAL23542 (finP)
 11.12 98.63 21.73 15.11 8.12 1.76 25.53 21.48 9.99 28.29 17.03 1.99 29.33 16.09 52.47 28.68 16.1 107.28 75.46 134.05 3.89 33.07 16.71 1.96 14.78 6.3 0.0 17.23 7.62 3.73 21.2 21.36 11.05 25.83 18.86 0.0 2.02 11.62 33.51

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)