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Heatmap: Cluster_26 (HCCA)

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Gene
25RC,0.25% glucose
3RC,0.25% glucose
58RC,0.25% glucose
ATCC 29212,0% glucose
ATCC 29212,0.15% glucose
ATCC 29212,0.25% glucose
ATCC 29212,15min
ATCC 29212,ampicillin,15min
ATCC 29212,bacitracin,15min
ATCC 29212,chloramphenicol,15min
ATCC 29212,erythromycin,15min
ATCC 29212,kanamycin,15min
ATCC 29212,lincomycin,15min
ATCC 29212,ofloxacin,15min
ATCC 33186,TSB
ATCC 33186,pH10
EF16C185,37C,4h,20mlMH
EF16C185-O2,37C,4h,20mlMH
F4,37C,4h,20mlMH
F4-11,37C,4h,20mlMH
OG1RF
OG1RF,(p)ppGpp0
OG1RF,(p)ppGpp0 codY-KO
OG1RF,Untreated,0min
OG1RF,Untreated,10min
OG1RF,Untreated,20min
OG1RF,Untreated,40min
OG1RF,WT
OG1RF,cellobiose
OG1RF,clpP-KO
OG1RF,gentiobiose
OG1RF,glucose
OG1RF,pCF10
OG1RF,pCIE
OG1RF,pDAK1010A,highFstpAD1
OG1RF,pDAK1010E,highFstEF0409
OG1RF,pDAK1010E,lowFstEF0409
OG1RF,phageVPE25,0min
OG1RF,phageVPE25,10min
OG1RF,phageVPE25,20min
V649,LVX
V649,Untreated
V649,pGR-IS256
V649,pGR-tetM
AEA92730 (cysE)
 183.38 42.62 42.87 62.46 81.23 75.8 76.8 64.43 61.2 42.32 41.83 57.14 29.5 61.28 189.71 92.53 55.97 43.34 26.16 54.21 32.1 217.43 210.34 146.96 156.05 70.13 134.63 128.58 125.77 126.86 344.87 223.95 134.34 77.2 76.68 69.07 59.68 138.65 143.76 123.59 130.31 113.01 62.5 45.26
AEA92731 (cysS)
 162.55 47.37 50.87 105.94 117.41 90.66 92.24 93.92 103.49 63.27 71.59 90.85 53.64 85.68 272.17 92.65 67.28 69.02 88.43 103.23 40.64 198.25 217.63 129.37 146.95 91.29 126.36 130.8 116.57 160.23 352.65 180.97 137.82 73.44 71.74 80.2 68.53 126.32 119.85 108.23 124.76 104.15 60.89 48.13
AEA92732 (cysS2)
 180.49 82.01 65.87 68.66 120.67 118.77 139.85 141.94 141.36 99.43 117.89 119.61 81.83 110.68 489.03 121.16 96.06 95.45 88.61 152.97 54.22 136.34 156.1 125.37 142.25 97.94 123.05 154.38 201.74 236.38 484.36 254.31 218.01 104.56 83.56 122.76 100.3 111.68 105.22 110.42 177.99 131.17 77.62 61.5
AEA92733 (OG1RF_10046)
 193.66 72.86 71.06 106.74 111.53 122.68 137.33 131.01 144.03 101.2 107.11 114.46 97.3 128.72 449.91 180.15 104.19 87.8 109.79 171.85 76.29 238.73 247.94 166.3 193.1 144.77 148.81 127.08 196.99 157.28 407.02 253.38 188.72 94.78 84.44 109.4 94.67 175.28 156.59 135.31 186.9 160.42 101.5 76.23
AEA92734 (OG1RF_10047)
 104.45 59.9 61.15 124.09 114.82 104.64 157.76 179.8 185.19 143.9 124.06 192.34 107.48 190.42 537.78 235.76 118.24 133.79 131.04 209.65 108.49 180.61 204.69 102.14 119.64 120.69 84.22 125.88 217.99 172.99 432.12 280.95 240.18 119.73 92.07 125.32 112.54 133.75 95.69 86.1 198.85 156.54 107.12 80.47
AEA92921 (celA)
 118.58 56.77 54.93 35.03 35.84 161.32 4.92 4.26 9.11 4.23 5.43 3.91 5.12 5.03 50.29 7.78 3.24 12.73 40.87 18.82 4.56 6.79 6.91 4.47 3.08 0.96 1.83 1.56 758.41 1.98 11929.45 11.05 2.68 0.98 1.05 1.71 0.79 4.47 6.35 8.95 112.93 4.27 12.82 10.38
AEA92922 (celB)
 99.58 80.64 81.5 52.55 29.93 137.02 3.14 4.96 5.73 3.95 4.1 4.59 4.25 3.74 20.89 7.67 3.31 5.77 23.65 16.89 4.85 6.59 6.12 4.04 1.57 0.6 1.19 2.42 1190.65 2.23 8354.93 11.08 1.13 0.18 0.29 0.69 0.0 3.99 4.51 6.68 95.2 2.09 4.65 3.72
AEA92937 (chiC)
 56.65 38.48 37.14 27.1 22.96 50.29 9.03 8.25 17.46 12.15 18.88 11.83 18.67 9.61 252.41 159.73 10.81 94.6 41.7 9.69 89.96 74.58 8.42 4.84 4.77 5.9 8.34 4.94 47.58 5.22 607.42 47.07 5.18 4.09 3.9 4.03 2.76 18.64 15.74 17.35 210.69 14.31 138.17 100.51
AEA92938 (OG1RF_10251)
 50.07 37.21 24.78 29.77 14.21 54.89 3.69 2.52 13.95 7.85 12.82 5.0 11.47 6.88 195.9 121.94 10.47 119.87 52.14 7.26 109.9 105.42 9.72 4.63 3.02 4.54 8.97 7.27 42.18 6.58 773.67 44.96 2.75 2.27 1.61 2.24 2.85 20.83 14.03 16.26 195.21 13.08 118.19 95.58
AEA92959 (OG1RF_10272)
 38.94 7.36 10.66 21.18 15.55 24.51 2.81 3.67 3.18 2.67 3.9 3.65 4.86 3.63 140.31 19.22 1.94 3.29 98.93 37.63 5.61 160.3 5.6 3.59 4.31 1.29 10.79 3.39 3.32 4.37 189.4 4.14 2.21 0.89 4.61 3.0 2.03 6.41 9.46 11.0 38.76 1.18 9.02 8.94
AEA92960 (OG1RF_10273)
 20.48 7.09 8.89 13.02 16.38 15.11 1.86 1.84 3.83 1.95 4.14 2.56 5.98 2.52 56.14 16.03 1.02 2.12 53.82 21.64 3.81 55.45 3.32 2.76 2.73 1.66 5.17 1.77 3.02 2.26 85.3 3.01 1.87 0.92 3.24 2.35 1.58 6.4 7.99 8.35 36.35 1.3 6.34 6.24
AEA93023 (OG1RF_10336)
 55.14 35.18 29.96 2.24 59.24 139.92 12.11 9.72 13.46 9.7 9.61 5.79 12.88 5.31 22.19 44.28 22.42 13.95 11.32 17.94 3.65 26.14 21.89 23.43 25.24 31.96 35.07 25.66 578.76 25.24 149.76 63.81 22.27 18.0 21.64 22.21 17.26 51.59 46.6 49.51 15.98 24.55 12.31 8.13
AEA93118 (fruK)
 91.89 66.74 66.14 3.3 44.87 86.55 1.63 2.04 1.76 0.79 1.14 1.01 2.11 1.16 60.99 12.32 7.63 53.66 10.04 67.43 36.66 13.45 4.97 8.54 1.19 0.33 2.17 7.28 69.45 12.86 285.36 58.07 6.04 1.43 1.4 0.48 1.05 5.57 5.85 5.01 10.24 5.09 6.21 8.29
AEA93151 (yegS)
 252.3 209.98 204.7 52.9 341.11 280.01 427.37 423.84 421.04 501.25 397.37 410.76 268.59 400.93 480.04 398.01 302.03 261.89 214.8 524.63 99.98 911.33 751.82 445.53 456.16 355.75 502.23 504.88 512.7 427.38 677.18 668.73 735.72 334.34 325.68 332.36 304.94 532.6 565.67 517.94 371.13 226.95 272.84 173.7
AEA93190 (OG1RF_10503)
 139.53 73.28 76.29 247.13 126.44 118.72 27.07 28.79 38.17 22.83 27.78 22.05 25.61 21.39 48.77 59.77 92.77 137.4 176.67 135.08 164.39 84.0 43.55 36.62 11.18 15.04 52.05 100.13 280.38 142.84 362.55 106.99 45.84 23.51 15.68 14.44 17.42 44.69 39.33 34.04 55.4 57.55 44.72 90.6
AEA93245 (dhdh)
 71.38 31.34 32.66 63.09 34.75 31.18 22.17 18.48 25.89 19.89 27.33 19.64 24.28 24.84 40.16 73.36 24.89 39.79 21.35 34.67 13.37 65.65 18.03 24.0 17.45 10.67 49.12 21.8 60.12 36.58 96.5 67.18 30.49 10.21 9.9 8.51 9.66 15.86 21.16 23.84 29.06 18.32 27.77 13.73
AEA93262 (ppx)
 100.62 57.46 59.98 51.43 85.22 151.08 98.38 110.39 80.71 93.86 106.36 106.21 96.72 97.5 158.44 95.98 68.92 58.34 40.42 72.64 48.1 184.92 178.94 109.75 100.44 163.5 117.56 89.9 117.38 61.03 171.01 190.9 192.04 104.94 82.88 94.35 90.05 147.18 117.83 115.82 115.71 65.24 61.4 40.13
AEA93433 (OG1RF_10746)
 35.14 1.92 2.32 29.64 39.66 13.53 1.25 1.21 1.05 1.23 1.36 1.5 0.42 1.51 81.5 8.0 22.34 25.74 67.01 32.19 12.56 8.79 0.88 14.43 1.3 0.28 1.43 37.79 68.35 43.32 163.89 39.77 5.11 0.88 0.31 0.51 0.07 16.03 8.94 6.91 20.32 12.01 12.19 16.06
AEA93434 (OG1RF_10747)
 372.57 22.93 13.91 21.61 126.87 71.47 0.0 22.49 0.0 4.67 5.61 7.44 20.69 0.0 414.57 20.16 50.53 102.73 106.19 78.45 19.68 30.11 1.94 22.98 16.87 0.0 4.35 47.23 116.08 50.71 855.23 29.26 0.0 1.52 2.13 0.0 0.0 30.31 19.56 20.66 35.82 32.27 29.27 23.32
AEA93435 (OG1RF_10748)
 0.0 0.0 0.0 16.47 48.35 21.67 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 190.58 10.24 11.38 23.79 42.32 18.86 5.05 52.01 8.86 0.0 2.14 0.0 0.0 3.6 21.49 4.66 144.54 4.15 4.0 0.0 3.35 4.03 0.0 0.0 0.0 0.0 18.53 18.58 20.78 37.11
AEA93436 (OG1RF_10749)
 96.53 4.41 3.83 18.51 93.14 28.77 2.52 1.83 2.12 2.86 2.06 5.46 3.16 3.34 219.8 10.69 33.15 98.98 179.37 86.65 8.76 6.15 1.08 21.67 3.78 1.85 3.73 27.23 63.2 30.28 571.1 13.37 0.23 1.9 1.33 1.49 0.9 43.18 31.8 27.86 20.77 13.48 18.05 21.8
AEA93439 (OG1RF_10752)
 229.44 4.49 6.61 54.54 55.66 38.57 22.12 22.17 11.02 14.83 15.24 19.49 10.32 17.56 351.35 26.17 230.94 140.36 79.67 68.98 57.15 48.59 4.58 127.18 18.76 2.35 111.71 623.39 2600.94 1124.54 2288.47 459.37 165.41 38.84 6.6 11.08 48.08 239.98 170.2 117.74 98.95 540.86 55.04 81.67
AEA93440 (bglA2)
 56.8 9.31 8.9 6.09 40.82 13.17 6.11 6.02 1.88 4.16 5.84 5.48 5.27 6.22 39.82 9.77 44.67 44.94 21.35 24.75 16.59 72.17 5.45 52.37 8.97 1.67 36.06 84.97 598.5 202.92 1099.75 44.83 13.43 2.57 2.58 3.16 6.59 84.72 49.64 37.8 24.54 151.32 14.98 22.3
AEA93441 (OG1RF_10754)
 181.54 29.7 31.71 210.53 395.25 82.27 25.85 29.94 31.45 23.58 25.86 26.66 22.25 28.49 128.73 74.69 64.41 75.89 84.32 62.87 93.43 78.37 28.54 111.54 42.38 32.99 70.1 83.49 851.34 280.6 1892.72 58.28 50.22 19.4 35.79 27.01 23.93 159.64 119.72 89.63 67.68 167.0 48.88 61.91
AEA93686 (OG1RF_10999)
 86.77 45.38 37.61 3.97 75.17 141.34 31.66 29.04 33.51 29.23 43.19 26.8 15.6 27.78 286.04 28.34 105.96 94.5 29.68 87.22 1.97 37.54 42.97 76.14 26.03 55.1 209.57 75.19 92.01 83.8 340.95 153.91 95.1 32.25 93.27 137.44 74.06 79.37 61.0 54.13 174.55 61.65 56.34 41.19
AEA93701 (yckE)
 70.89 31.17 27.03 30.63 26.2 115.01 24.96 23.93 31.25 24.84 30.17 30.15 33.13 24.09 28.47 35.71 18.29 38.98 24.04 17.61 19.65 30.59 33.26 36.01 73.63 59.45 51.31 28.58 699.75 34.84 67.26 62.7 23.71 35.32 151.66 71.89 49.76 30.63 62.31 76.53 32.81 27.91 33.16 37.7
AEA93702 (OG1RF_11015)
 92.52 53.73 52.7 39.85 62.84 171.01 40.19 44.33 48.52 42.32 59.52 42.39 48.87 36.42 62.18 56.13 35.33 125.0 102.26 73.22 41.83 47.76 46.1 52.91 117.65 140.88 75.22 52.9 1457.7 66.83 126.57 132.1 34.89 51.62 267.77 157.28 81.79 60.36 94.94 115.34 45.29 41.5 53.67 58.51
AEA93886 (licH)
 55.85 47.75 45.57 2.81 48.61 50.83 3.13 3.25 16.32 4.16 5.6 4.03 2.47 2.81 14.7 17.05 2.89 8.51 13.56 14.73 9.47 30.05 83.7 12.75 2.17 1.67 5.16 2.13 410.02 2.64 277.28 8.17 4.09 1.35 39.84 28.72 16.31 91.3 61.82 67.56 109.88 80.19 242.26 157.61
AEA94217 (amiD4)
 0.0 7.13 7.06 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.87 9.64 2.81 2.32 2.33 1.63 3.42 1.96 2.81 2.54 32.29 2.92 2.88 1.01 2.53 2.1 1.33 4.36 4.81 6.0 8.21 1.48 4.49 3.34
AEA94218 (OG1RF_11531)
 0.21 5.09 5.07 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.55 5.48 1.5 0.72 0.42 0.41 2.03 0.97 0.76 1.19 15.63 1.01 0.76 0.3 0.51 0.46 0.25 1.8 1.74 2.78 3.15 0.32 1.42 1.38
AEA94515 (sufD)
 177.38 104.12 100.19 182.11 149.72 199.4 137.38 150.84 157.15 121.04 113.3 129.97 85.57 133.3 262.47 130.42 63.08 97.86 72.45 133.61 123.76 116.28 74.89 150.97 275.69 226.13 204.17 155.78 237.77 331.37 496.06 337.94 276.27 128.47 103.2 118.02 103.33 104.45 156.52 173.2 203.01 105.73 119.57 114.16
AEA94516 (sufC)
 166.87 80.73 69.71 118.43 88.91 166.8 112.35 114.78 147.66 79.41 74.18 116.68 69.45 98.25 213.09 85.48 61.79 58.7 16.19 31.68 86.13 89.27 65.63 129.75 222.66 184.08 164.3 109.85 228.81 242.39 358.13 209.67 176.16 102.47 90.17 99.15 104.39 68.65 117.89 128.15 179.69 107.83 95.05 110.38
AEA94934 (ulaA2)
 113.06 10.98 10.03 6.95 26.27 35.52 48.01 54.89 40.88 53.32 98.85 45.22 50.72 49.99 162.37 22.22 39.02 71.59 15.34 85.68 2.85 35.35 16.39 70.74 13.51 1.71 31.77 25.25 94.73 32.43 921.5 45.15 17.22 5.86 4.27 5.11 4.73 25.44 30.49 23.74 353.12 102.65 30.49 21.36
AEA94935 (ptsB)
 151.97 17.67 12.51 2.77 8.15 31.7 77.61 65.46 71.09 55.23 138.33 82.13 75.7 57.86 542.49 25.89 108.93 124.21 13.61 80.68 6.61 17.96 9.84 85.76 10.83 1.77 33.16 64.48 150.13 65.12 1184.75 74.76 15.16 3.98 2.77 3.8 1.01 40.8 34.82 18.96 371.96 167.94 26.44 18.48
AEA95053 (opp2A)
 172.34 720.58 736.94 42.22 158.64 225.1 227.99 238.01 433.44 176.67 251.47 224.78 122.85 210.93 346.02 1884.93 63.19 363.56 535.69 842.71 45.87 1235.91 870.42 449.92 107.23 64.63 453.74 629.9 673.92 283.55 1859.94 1031.57 420.72 66.12 500.84 130.96 106.81 173.78 263.45 251.08 147.31 55.01 131.28 108.23
AEA95054 (opp2C)
 110.95 285.66 267.71 57.21 88.51 154.75 153.33 145.09 270.19 113.4 143.53 141.29 85.67 136.78 163.63 636.95 20.78 59.78 48.45 119.22 28.48 635.5 513.77 488.44 46.38 28.2 354.98 266.59 348.48 456.32 643.1 483.2 254.99 50.65 431.58 73.81 70.53 163.47 240.09 225.16 85.5 33.09 69.07 63.82
AEA95055 (opp2B)
 91.15 215.8 201.25 56.49 72.51 130.83 110.06 106.38 194.43 93.48 111.44 101.26 74.09 102.22 181.41 738.83 13.47 43.77 27.88 77.46 32.81 600.12 467.89 379.79 26.5 32.61 246.37 243.44 383.81 351.6 431.86 439.56 220.35 46.07 349.83 51.7 60.11 154.12 173.98 162.27 67.91 26.09 51.19 47.83
AEA95056 (opp2F)
 137.54 252.44 234.29 90.16 63.23 150.05 114.39 111.82 200.62 102.4 103.59 91.8 79.3 106.82 137.74 333.93 8.32 21.75 16.23 35.11 29.95 473.58 369.68 355.34 25.42 35.41 241.98 162.82 576.35 373.45 345.76 388.18 172.53 56.6 389.72 53.52 66.9 176.76 174.51 160.21 51.03 27.05 41.81 45.72
AEA95057 (opp2D)
 114.77 261.61 256.34 80.88 57.65 142.74 132.87 120.08 233.45 110.17 134.65 125.78 122.67 131.24 164.41 352.38 11.41 31.5 23.83 51.48 27.6 635.27 592.5 481.46 97.25 46.65 309.18 203.9 896.92 459.16 337.79 483.39 196.0 84.64 881.5 100.9 114.47 264.95 345.56 303.64 52.83 31.63 57.38 53.6
AEA95152 (OG1RF_12465)
 31.85 44.02 33.96 36.14 46.38 49.11 132.2 124.56 76.85 145.1 134.46 134.19 127.34 128.04 22.37 5.9 29.41 133.01 81.89 108.85 71.51 114.52 22.95 246.15 118.36 11.11 26.49 47.06 348.85 100.31 50.95 88.28 37.77 41.64 26.4 34.84 49.84 102.2 180.8 113.72 84.37 78.37 68.65 75.22
AEA95153 (OG1RF_12466)
 63.46 36.0 23.42 49.2 33.49 35.89 94.86 76.07 62.52 126.12 109.43 100.88 116.73 85.5 21.5 8.32 8.8 23.17 42.34 35.76 86.96 149.02 32.04 115.24 48.1 5.87 18.17 47.26 290.19 67.7 48.39 92.41 33.05 38.66 28.62 36.66 56.79 59.21 107.42 73.27 61.02 50.42 58.12 73.68

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)