Heatmap: Cluster_26 (HCCA)

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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
25RC,0.25% glucose
3RC,0.25% glucose
58RC,0.25% glucose
ATCC 29212,0% glucose
ATCC 29212,0.15% glucose
ATCC 29212,0.25% glucose
ATCC 29212,15min
ATCC 29212,ampicillin,15min
ATCC 29212,bacitracin,15min
ATCC 29212,chloramphenicol,15min
ATCC 29212,erythromycin,15min
ATCC 29212,kanamycin,15min
ATCC 29212,lincomycin,15min
ATCC 29212,ofloxacin,15min
ATCC 33186,TSB
ATCC 33186,pH10
EF16C185,37C,4h,20mlMH
EF16C185-O2,37C,4h,20mlMH
F4,37C,4h,20mlMH
F4-11,37C,4h,20mlMH
OG1RF
OG1RF,(p)ppGpp0
OG1RF,(p)ppGpp0 codY-KO
OG1RF,Untreated,0min
OG1RF,Untreated,10min
OG1RF,Untreated,20min
OG1RF,Untreated,40min
OG1RF,WT
OG1RF,cellobiose
OG1RF,clpP-KO
OG1RF,gentiobiose
OG1RF,glucose
OG1RF,pCF10
OG1RF,pCIE
OG1RF,pDAK1010A,highFstpAD1
OG1RF,pDAK1010E,highFstEF0409
OG1RF,pDAK1010E,lowFstEF0409
OG1RF,phageVPE25,0min
OG1RF,phageVPE25,10min
OG1RF,phageVPE25,20min
V649,LVX
V649,Untreated
V649,pGR-IS256
V649,pGR-tetM
AEA92730 (cysE)
0.85 -1.26 -1.25 -0.7 -0.32 -0.42 -0.41 -0.66 -0.73 -1.27 -1.28 -0.83 -1.79 -0.73 0.9 -0.14 -0.86 -1.23 -1.96 -0.91 -1.66 1.1 1.05 0.53 0.62 -0.54 0.4 0.34 0.31 0.32 1.76 1.14 0.4 -0.4 -0.41 -0.56 -0.77 0.45 0.5 0.28 0.36 0.15 -0.7 -1.17
AEA92731 (cysS)
0.53 -1.24 -1.14 -0.08 0.07 -0.31 -0.28 -0.26 -0.12 -0.83 -0.65 -0.3 -1.07 -0.39 1.28 -0.28 -0.74 -0.7 -0.34 -0.12 -1.47 0.82 0.96 0.21 0.39 -0.3 0.17 0.22 0.05 0.51 1.65 0.69 0.3 -0.61 -0.65 -0.48 -0.71 0.17 0.09 -0.05 0.15 -0.11 -0.88 -1.22
AEA92732 (cysS2)
0.36 -0.78 -1.1 -1.04 -0.22 -0.25 -0.01 0.01 0.0 -0.5 -0.26 -0.24 -0.78 -0.35 1.79 -0.22 -0.55 -0.56 -0.67 0.12 -1.38 -0.05 0.15 -0.17 0.01 -0.53 -0.2 0.13 0.52 0.75 1.78 0.85 0.63 -0.43 -0.75 -0.2 -0.49 -0.34 -0.42 -0.35 0.34 -0.1 -0.86 -1.2
AEA92733 (OG1RF_10046)
0.35 -1.06 -1.09 -0.51 -0.44 -0.3 -0.14 -0.21 -0.07 -0.58 -0.5 -0.4 -0.64 -0.23 1.57 0.25 -0.54 -0.79 -0.46 0.18 -0.99 0.66 0.71 0.13 0.35 -0.07 -0.03 -0.25 0.38 0.05 1.43 0.74 0.32 -0.68 -0.84 -0.47 -0.68 0.21 0.05 -0.16 0.3 0.08 -0.58 -0.99
AEA92734 (OG1RF_10047)
-0.59 -1.39 -1.36 -0.34 -0.45 -0.59 0.01 0.19 0.24 -0.13 -0.34 0.29 -0.55 0.28 1.77 0.59 -0.41 -0.23 -0.26 0.42 -0.53 0.2 0.38 -0.62 -0.39 -0.38 -0.9 -0.32 0.47 0.14 1.46 0.84 0.61 -0.39 -0.77 -0.33 -0.48 -0.23 -0.72 -0.87 0.34 -0.01 -0.55 -0.97
AEA92921 (celA)
-1.38 -2.44 -2.49 -3.13 -3.1 -0.93 -5.97 -6.17 -5.08 -6.18 -5.82 -6.3 -5.91 -5.93 -2.61 -5.3 -6.57 -4.6 -2.91 -4.03 -6.08 -5.5 -5.48 -6.11 -6.64 -8.33 -7.39 -7.63 1.3 -7.28 5.28 -4.8 -6.84 -8.3 -8.19 -7.49 -8.6 -6.11 -5.6 -5.1 -1.45 -6.17 -4.58 -4.89
AEA92922 (celB)
-1.23 -1.54 -1.52 -2.16 -2.97 -0.77 -6.22 -5.56 -5.35 -5.89 -5.84 -5.67 -5.78 -5.97 -3.49 -4.93 -6.14 -5.34 -3.31 -3.79 -5.59 -5.15 -5.26 -5.86 -7.22 -8.61 -7.62 -6.59 2.35 -6.71 5.16 -4.4 -7.69 -10.37 -9.63 -8.41 - -5.88 -5.7 -5.13 -1.3 -6.81 -5.65 -5.98
AEA92937 (chiC)
0.08 -0.47 -0.53 -0.98 -1.22 -0.09 -2.56 -2.69 -1.61 -2.14 -1.5 -2.18 -1.52 -2.48 2.24 1.58 -2.31 0.82 -0.36 -2.46 0.75 0.48 -2.67 -3.47 -3.48 -3.18 -2.68 -3.44 -0.17 -3.35 3.51 -0.18 -3.37 -3.71 -3.78 -3.73 -4.27 -1.52 -1.76 -1.62 1.98 -1.9 1.37 0.91
AEA92938 (OG1RF_10251)
-0.12 -0.54 -1.13 -0.87 -1.93 0.02 -3.88 -4.43 -1.96 -2.79 -2.08 -3.44 -2.24 -2.98 1.85 1.17 -2.37 1.14 -0.06 -2.9 1.02 0.96 -2.48 -3.55 -4.17 -3.58 -2.6 -2.9 -0.36 -3.04 3.83 -0.27 -4.3 -4.58 -5.08 -4.6 -4.25 -1.38 -1.95 -1.74 1.85 -2.05 1.12 0.82
AEA92959 (OG1RF_10272)
0.86 -1.54 -1.01 -0.01 -0.46 0.2 -2.93 -2.54 -2.75 -3.0 -2.46 -2.55 -2.14 -2.56 2.71 -0.16 -3.46 -2.7 2.21 0.81 -1.93 2.91 -1.93 -2.58 -2.31 -4.05 -0.99 -2.66 -2.69 -2.29 3.15 -2.37 -3.28 -4.59 -2.21 -2.83 -3.4 -1.74 -1.18 -0.96 0.86 -4.19 -1.25 -1.26
AEA92960 (OG1RF_10273)
0.82 -0.71 -0.38 0.17 0.5 0.38 -2.64 -2.65 -1.6 -2.57 -1.48 -2.18 -0.95 -2.2 2.28 0.47 -3.51 -2.45 2.22 0.9 -1.6 2.26 -1.8 -2.07 -2.08 -2.8 -1.16 -2.71 -1.94 -2.36 2.88 -1.94 -2.63 -3.66 -1.84 -2.3 -2.88 -0.86 -0.54 -0.47 1.65 -3.15 -0.87 -0.89
AEA93023 (OG1RF_10336)
0.39 -0.26 -0.49 -4.23 0.49 1.73 -1.8 -2.11 -1.65 -2.12 -2.13 -2.86 -1.71 -2.99 -0.92 0.07 -0.91 -1.59 -1.89 -1.23 -3.53 -0.69 -0.94 -0.85 -0.74 -0.4 -0.26 -0.72 3.78 -0.74 1.83 0.6 -0.92 -1.23 -0.96 -0.92 -1.29 0.29 0.15 0.23 -1.4 -0.78 -1.77 -2.37
AEA93118 (fruK)
1.83 1.36 1.35 -2.97 0.79 1.74 -3.99 -3.67 -3.88 -5.03 -4.5 -4.68 -3.62 -4.48 1.23 -1.07 -1.76 1.05 -1.37 1.38 0.5 -0.95 -2.38 -1.6 -4.44 -6.31 -3.58 -1.83 1.42 -1.01 3.46 1.16 -2.1 -4.18 -4.21 -5.74 -4.63 -2.22 -2.15 -2.37 -1.34 -2.35 -2.06 -1.65
AEA93151 (yegS)
-0.68 -0.94 -0.98 -2.93 -0.24 -0.53 0.08 0.07 0.06 0.31 -0.02 0.02 -0.59 -0.01 0.25 -0.02 -0.42 -0.63 -0.91 0.38 -2.02 1.17 0.9 0.14 0.17 -0.18 0.31 0.32 0.34 0.08 0.74 0.73 0.86 -0.27 -0.31 -0.28 -0.41 0.4 0.49 0.36 -0.12 -0.83 -0.57 -1.22
AEA93190 (OG1RF_10503)
0.8 -0.13 -0.07 1.62 0.66 0.57 -1.57 -1.48 -1.07 -1.81 -1.53 -1.86 -1.65 -1.91 -0.72 -0.42 0.21 0.78 1.14 0.75 1.04 0.07 -0.88 -1.13 -2.84 -2.41 -0.62 0.32 1.81 0.83 2.18 0.42 -0.81 -1.77 -2.35 -2.47 -2.2 -0.84 -1.03 -1.24 -0.53 -0.48 -0.84 0.18
AEA93245 (dhdh)
1.19 -0.0 0.06 1.01 0.15 -0.01 -0.5 -0.76 -0.28 -0.66 -0.2 -0.68 -0.37 -0.34 0.36 1.23 -0.33 0.34 -0.55 0.14 -1.23 1.07 -0.8 -0.39 -0.85 -1.56 0.65 -0.52 0.94 0.22 1.62 1.1 -0.04 -1.62 -1.66 -1.88 -1.7 -0.98 -0.57 -0.4 -0.11 -0.78 -0.18 -1.19
AEA93262 (ppx)
-0.04 -0.85 -0.79 -1.01 -0.28 0.55 -0.07 0.09 -0.36 -0.14 0.04 0.04 -0.1 -0.09 0.62 -0.11 -0.59 -0.83 -1.36 -0.51 -1.1 0.84 0.79 0.09 -0.04 0.66 0.18 -0.2 0.18 -0.76 0.73 0.88 0.89 0.02 -0.32 -0.13 -0.2 0.51 0.19 0.16 0.16 -0.67 -0.75 -1.37
AEA93433 (OG1RF_10746)
0.85 -3.35 -3.08 0.6 1.02 -0.53 -3.97 -4.02 -4.22 -4.0 -3.85 -3.7 -5.55 -3.69 2.06 -1.29 0.19 0.4 1.78 0.72 -0.64 -1.15 -4.48 -0.44 -3.91 -6.14 -3.77 0.95 1.81 1.15 3.07 1.02 -1.94 -4.47 -6.0 -5.26 -8.05 -0.29 -1.13 -1.5 0.06 -0.7 -0.68 -0.28
AEA93434 (OG1RF_10747)
2.52 -1.5 -2.22 -1.58 0.97 0.14 - -1.53 - -3.79 -3.53 -3.12 -1.65 - 2.68 -1.68 -0.36 0.66 0.71 0.28 -1.72 -1.11 -5.06 -1.5 -1.94 - -3.9 -0.46 0.84 -0.35 3.72 -1.15 - -5.42 -4.93 - - -1.1 -1.73 -1.65 -0.86 -1.01 -1.15 -1.48
AEA93435 (OG1RF_10748)
- - - -0.02 1.53 0.37 - - - - - - - - 3.51 -0.71 -0.56 0.51 1.34 0.17 -1.73 1.64 -0.92 - -2.97 - - -2.22 0.36 -1.84 3.11 -2.01 -2.07 - -2.32 -2.05 - - - - 0.15 0.15 0.31 1.15
AEA93436 (OG1RF_10749)
1.21 -3.24 -3.44 -1.17 1.16 -0.53 -4.05 -4.5 -4.3 -3.86 -4.34 -2.93 -3.72 -3.64 2.4 -1.96 -0.33 1.25 2.11 1.06 -2.25 -2.76 -5.27 -0.94 -3.46 -4.49 -3.48 -0.61 0.6 -0.46 3.78 -1.64 -7.49 -4.45 -4.97 -4.81 -5.54 0.05 -0.39 -0.58 -1.0 -1.63 -1.21 -0.93
AEA93439 (OG1RF_10752)
-0.05 -5.73 -5.17 -2.12 -2.09 -2.62 -3.43 -3.42 -4.43 -4.0 -3.96 -3.61 -4.53 -3.76 0.56 -3.18 -0.04 -0.76 -1.58 -1.79 -2.06 -2.29 -5.7 -0.9 -3.66 -6.66 -1.09 1.39 3.45 2.24 3.27 0.95 -0.52 -2.61 -5.17 -4.42 -2.31 0.01 -0.48 -1.01 -1.26 1.19 -2.11 -1.54
AEA93440 (bglA2)
-0.26 -2.87 -2.94 -3.48 -0.74 -2.37 -3.48 -3.5 -5.18 -4.04 -3.54 -3.64 -3.69 -3.45 -0.78 -2.8 -0.61 -0.6 -1.67 -1.46 -2.04 0.08 -3.64 -0.38 -2.93 -5.35 -0.92 0.32 3.13 1.57 4.01 -0.6 -2.34 -4.73 -4.72 -4.43 -3.37 0.31 -0.46 -0.85 -1.47 1.15 -2.19 -1.61
AEA93441 (OG1RF_10754)
0.38 -2.23 -2.14 0.6 1.5 -0.76 -2.43 -2.22 -2.15 -2.56 -2.43 -2.39 -2.65 -2.29 -0.11 -0.9 -1.11 -0.88 -0.72 -1.15 -0.58 -0.83 -2.29 -0.32 -1.72 -2.08 -0.99 -0.74 2.61 1.01 3.76 -1.26 -1.47 -2.84 -1.96 -2.37 -2.54 0.2 -0.22 -0.64 -1.04 0.26 -1.51 -1.17
AEA93686 (OG1RF_10999)
0.16 -0.77 -1.04 -4.29 -0.05 0.87 -1.29 -1.42 -1.21 -1.41 -0.85 -1.53 -2.31 -1.48 1.88 -1.45 0.45 0.28 -1.39 0.17 -5.3 -1.05 -0.85 -0.03 -1.58 -0.49 1.43 -0.05 0.25 0.11 2.14 0.99 0.29 -1.27 0.27 0.82 -0.07 0.03 -0.35 -0.52 1.17 -0.33 -0.46 -0.91
AEA93701 (yckE)
0.31 -0.88 -1.08 -0.9 -1.13 1.01 -1.2 -1.26 -0.87 -1.2 -0.92 -0.92 -0.79 -1.25 -1.01 -0.68 -1.65 -0.55 -1.25 -1.7 -1.54 -0.9 -0.78 -0.67 0.36 0.06 -0.16 -1.0 3.61 -0.72 0.23 0.13 -1.27 -0.7 1.41 0.33 -0.2 -0.9 0.12 0.42 -0.8 -1.04 -0.79 -0.6
AEA93702 (OG1RF_11015)
-0.21 -0.99 -1.02 -1.43 -0.77 0.68 -1.41 -1.27 -1.14 -1.34 -0.85 -1.34 -1.13 -1.56 -0.78 -0.93 -1.6 0.22 -0.07 -0.55 -1.36 -1.16 -1.22 -1.02 0.14 0.4 -0.51 -1.02 3.77 -0.68 0.24 0.3 -1.62 -1.05 1.32 0.55 -0.39 -0.83 -0.17 0.11 -1.24 -1.37 -1.0 -0.87
AEA93886 (licH)
0.22 -0.01 -0.07 -4.09 0.02 0.08 -3.94 -3.88 -1.56 -3.53 -3.1 -3.57 -4.28 -4.09 -1.71 -1.49 -4.05 -2.5 -1.82 -1.7 -2.34 -0.67 0.8 -1.91 -4.47 -4.84 -3.22 -4.49 3.1 -4.18 2.53 -2.55 -3.55 -5.15 -0.27 -0.74 -1.56 0.93 0.37 0.49 1.2 0.74 2.34 1.72
AEA94217 (amiD4)
- 1.3 1.29 - - - - - - - - - - - - - - - - - 1.02 1.74 -0.04 -0.32 -0.31 -0.82 0.24 -0.56 -0.04 -0.19 3.48 0.01 -0.01 -1.52 -0.19 -0.46 -1.12 0.59 0.73 1.05 1.51 -0.97 0.63 0.21
AEA94218 (OG1RF_11531)
-2.68 1.93 1.92 - - - - - - - - - - - - - - - - - 1.41 2.03 0.17 -0.89 -1.69 -1.69 0.6 -0.47 -0.82 -0.17 3.54 -0.41 -0.81 -2.14 -1.4 -1.53 -2.41 0.42 0.38 1.05 1.24 -2.08 0.09 0.04
AEA94515 (sufD)
0.13 -0.64 -0.7 0.17 -0.12 0.3 -0.24 -0.11 -0.05 -0.42 -0.52 -0.32 -0.92 -0.28 0.69 -0.31 -1.36 -0.73 -1.16 -0.28 -0.39 -0.48 -1.12 -0.1 0.77 0.48 0.33 -0.06 0.55 1.03 1.61 1.06 0.77 -0.34 -0.65 -0.46 -0.65 -0.64 -0.05 0.09 0.32 -0.62 -0.44 -0.51
AEA94516 (sufC)
0.43 -0.62 -0.83 -0.06 -0.48 0.43 -0.14 -0.11 0.26 -0.64 -0.74 -0.08 -0.83 -0.33 0.78 -0.53 -1.0 -1.08 -2.93 -1.96 -0.52 -0.47 -0.91 0.07 0.85 0.57 0.41 -0.17 0.89 0.97 1.53 0.76 0.51 -0.27 -0.46 -0.32 -0.24 -0.85 -0.07 0.05 0.54 -0.2 -0.38 -0.16
AEA94934 (ulaA2)
0.75 -2.61 -2.74 -3.27 -1.35 -0.92 -0.49 -0.29 -0.72 -0.33 0.56 -0.57 -0.41 -0.43 1.27 -1.6 -0.78 0.09 -2.13 0.35 -4.56 -0.93 -2.04 0.07 -2.31 -5.29 -1.08 -1.41 0.5 -1.05 3.78 -0.57 -1.96 -3.52 -3.98 -3.72 -3.83 -1.4 -1.14 -1.5 2.39 0.61 -1.14 -1.65
AEA94935 (ptsB)
0.69 -2.42 -2.92 -5.09 -3.54 -1.57 -0.28 -0.53 -0.41 -0.77 0.55 -0.2 -0.32 -0.71 2.52 -1.87 0.21 0.4 -2.79 -0.23 -3.84 -2.39 -3.26 -0.14 -3.12 -5.74 -1.51 -0.55 0.67 -0.54 3.65 -0.34 -2.64 -4.57 -5.09 -4.64 -6.55 -1.21 -1.44 -2.32 1.98 0.83 -1.84 -2.35
AEA95053 (opp2A)
-1.25 0.81 0.85 -3.28 -1.37 -0.87 -0.85 -0.78 0.08 -1.21 -0.71 -0.87 -1.74 -0.96 -0.24 2.2 -2.7 -0.17 0.39 1.04 -3.16 1.59 1.09 0.13 -1.93 -2.67 0.15 0.62 0.72 -0.53 2.18 1.33 0.04 -2.63 0.29 -1.65 -1.94 -1.24 -0.64 -0.71 -1.48 -2.9 -1.64 -1.92
AEA95054 (opp2C)
-0.92 0.44 0.35 -1.88 -1.25 -0.44 -0.46 -0.54 0.36 -0.89 -0.55 -0.57 -1.3 -0.62 -0.36 1.6 -3.34 -1.82 -2.12 -0.82 -2.89 1.59 1.29 1.21 -2.18 -2.9 0.75 0.34 0.73 1.12 1.61 1.2 0.28 -2.05 1.04 -1.51 -1.58 -0.36 0.19 0.1 -1.3 -2.67 -1.61 -1.72
AEA95055 (opp2B)
-0.96 0.29 0.18 -1.65 -1.29 -0.44 -0.69 -0.74 0.13 -0.92 -0.67 -0.81 -1.26 -0.79 0.03 2.06 -3.72 -2.02 -2.67 -1.19 -2.43 1.76 1.4 1.1 -2.74 -2.44 0.48 0.46 1.12 0.99 1.29 1.31 0.32 -1.94 0.98 -1.78 -1.56 -0.2 -0.03 -0.13 -1.38 -2.76 -1.79 -1.89
AEA95056 (opp2F)
-0.25 0.63 0.52 -0.86 -1.37 -0.12 -0.51 -0.55 0.3 -0.67 -0.66 -0.83 -1.04 -0.61 -0.25 1.03 -4.3 -2.91 -3.33 -2.22 -2.45 1.54 1.18 1.12 -2.68 -2.21 0.57 -0.0 1.82 1.19 1.08 1.25 0.08 -1.53 1.25 -1.61 -1.29 0.11 0.1 -0.03 -1.68 -2.59 -1.97 -1.84
AEA95057 (opp2D)
-0.94 0.24 0.21 -1.45 -1.94 -0.63 -0.73 -0.88 0.08 -1.0 -0.71 -0.81 -0.85 -0.75 -0.43 0.67 -4.28 -2.81 -3.21 -2.1 -3.0 1.52 1.42 1.12 -1.18 -2.24 0.49 -0.12 2.02 1.06 0.61 1.13 -0.17 -1.38 2.0 -1.13 -0.95 0.26 0.65 0.46 -2.06 -2.8 -1.94 -2.04
AEA95152 (OG1RF_12465)
-1.43 -0.96 -1.33 -1.24 -0.88 -0.8 0.63 0.54 -0.16 0.76 0.65 0.65 0.57 0.58 -1.94 -3.86 -1.54 0.64 -0.06 0.35 -0.26 0.42 -1.9 1.52 0.47 -2.95 -1.69 -0.86 2.03 0.23 -0.75 0.04 -1.18 -1.04 -1.7 -1.3 -0.78 0.26 1.08 0.41 -0.02 -0.13 -0.32 -0.19
AEA95153 (OG1RF_12466)
-0.02 -0.84 -1.46 -0.39 -0.94 -0.84 0.56 0.24 -0.04 0.97 0.77 0.65 0.86 0.41 -1.58 -2.95 -2.87 -1.47 -0.6 -0.85 0.43 1.21 -1.01 0.84 -0.42 -3.46 -1.82 -0.45 2.17 0.07 -0.41 0.52 -0.96 -0.74 -1.17 -0.81 -0.18 -0.12 0.74 0.19 -0.08 -0.35 -0.15 0.2

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.