Heatmap: Cluster_30 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
25RC,0.25% glucose
3RC,0.25% glucose
58RC,0.25% glucose
ATCC 29212,0% glucose
ATCC 29212,0.15% glucose
ATCC 29212,0.25% glucose
ATCC 29212,15min
ATCC 29212,ampicillin,15min
ATCC 29212,bacitracin,15min
ATCC 29212,chloramphenicol,15min
ATCC 29212,erythromycin,15min
ATCC 29212,kanamycin,15min
ATCC 29212,lincomycin,15min
ATCC 29212,ofloxacin,15min
ATCC 33186,TSB
ATCC 33186,pH10
EF16C185,37C,4h,20mlMH
EF16C185-O2,37C,4h,20mlMH
F4,37C,4h,20mlMH
F4-11,37C,4h,20mlMH
OG1RF
OG1RF,(p)ppGpp0
OG1RF,(p)ppGpp0 codY-KO
OG1RF,Untreated,0min
OG1RF,Untreated,10min
OG1RF,Untreated,20min
OG1RF,Untreated,40min
OG1RF,WT
OG1RF,cellobiose
OG1RF,clpP-KO
OG1RF,gentiobiose
OG1RF,glucose
OG1RF,pCF10
OG1RF,pCIE
OG1RF,pDAK1010A,highFstpAD1
OG1RF,pDAK1010E,highFstEF0409
OG1RF,pDAK1010E,lowFstEF0409
OG1RF,phageVPE25,0min
OG1RF,phageVPE25,10min
OG1RF,phageVPE25,20min
V649,LVX
V649,Untreated
V649,pGR-IS256
V649,pGR-tetM
AEA92703 (OG1RF_10016)
-0.29 -0.05 -0.14 0.97 1.21 0.54 -0.19 -0.14 -0.31 -0.56 -0.23 -0.26 -0.46 -0.12 -1.6 0.06 -0.56 -1.55 -1.95 -1.35 -0.12 0.03 0.04 0.01 0.86 0.98 0.29 -0.66 0.19 -0.6 -0.54 0.45 0.13 0.22 -0.37 -0.05 -0.0 0.69 0.81 0.77 -0.26 -0.69 -0.96 -1.28
AEA92724 (proB)
0.05 0.81 0.79 -5.26 1.75 1.12 -0.01 -0.35 0.79 -0.5 0.18 -0.2 -0.27 -0.13 -1.63 0.25 -1.57 -4.5 -2.99 -2.79 -2.43 -0.35 0.17 0.06 1.16 0.19 0.45 -1.48 -0.97 -0.41 -1.83 -0.68 0.15 -0.47 -0.31 -0.08 -0.03 0.71 1.35 1.49 -0.79 -1.65 -0.89 -1.3
AEA92768 (hupB)
-1.06 -3.16 -2.74 1.56 2.34 2.14 -2.1 -3.97 -3.76 - - -3.98 - - 0.01 -1.54 - - -3.55 -6.41 -1.6 2.74 2.91 -2.96 -3.49 -4.33 -5.33 -0.29 - -4.69 -6.72 - -0.43 -0.45 -2.19 -1.46 -1.61 -3.03 -2.34 -2.41 1.29 1.37 1.51 1.34
AEA92784 (OG1RF_10097)
0.54 0.72 0.71 1.78 1.92 2.02 -0.6 -0.71 -0.4 -0.74 -0.14 -0.55 -0.15 -0.5 1.03 0.69 -1.14 -1.92 -0.99 -1.27 -2.15 -0.69 -0.9 -1.49 -1.6 -1.78 -1.57 -1.33 -0.63 -0.78 -1.07 -1.1 0.32 -1.67 -1.01 -1.46 -1.87 -0.09 -0.03 -0.05 1.9 0.11 -0.68 -0.75
AEA92968 (OG1RF_10281)
0.34 0.52 0.36 -5.16 1.01 1.37 0.25 0.17 -0.93 0.28 0.49 0.1 0.1 0.19 -0.25 1.7 -2.22 -0.41 -1.99 0.13 0.54 -0.28 -0.18 -1.42 0.29 1.19 1.4 -1.9 -1.18 -2.49 -0.48 0.22 1.01 -1.18 -2.52 -2.07 -1.5 -0.97 -0.3 -0.37 0.43 -1.83 -0.64 -2.13
AEA93013 (dtpT)
0.07 -0.24 -0.32 -2.86 2.22 1.65 0.93 0.88 1.11 0.73 0.8 0.87 0.62 0.87 -0.45 -1.09 0.25 -1.33 -2.82 -1.06 -2.03 -4.88 -5.08 -1.44 -0.02 0.19 0.12 -1.33 -0.1 -0.92 -1.1 0.63 -0.36 -0.21 -1.82 -1.25 -0.74 -0.11 -0.15 -0.31 -1.22 -0.55 -0.53 -1.62
AEA93034 (OG1RF_10347)
-0.33 1.14 1.19 -2.09 0.85 0.68 -0.22 -0.25 -0.07 -0.29 -0.17 -0.2 -0.27 -0.08 -0.56 -0.4 -0.61 -2.22 -2.52 -2.07 -1.46 -0.99 -1.02 0.37 0.65 0.28 0.17 -0.88 0.41 -0.22 -0.93 -0.1 -0.14 0.14 0.24 0.63 0.31 0.34 0.92 1.06 0.72 -0.69 -0.67 -0.96
AEA93087 (OG1RF_10400)
-0.59 0.19 0.27 -1.32 1.34 0.96 -0.26 -0.29 0.42 -0.33 -0.1 -0.26 -0.6 -0.22 -0.94 0.18 -0.77 -1.39 -2.81 -1.27 -1.25 -0.22 -0.43 -0.01 0.59 0.39 0.37 -0.78 -0.17 -0.55 -0.77 0.46 0.39 -0.01 -0.45 -0.24 -0.22 1.01 1.35 1.07 0.04 -0.91 -0.1 -0.42
AEA93216 (OG1RF_10529)
-0.11 0.41 0.12 -6.27 2.09 1.36 -1.23 -1.08 -0.14 -1.0 -0.53 -1.07 -0.6 -1.01 -1.34 0.27 -1.54 -3.27 -2.96 -2.51 -1.77 1.2 1.95 -0.28 0.33 0.13 0.1 -0.55 0.29 -0.87 -0.74 0.57 -0.4 -0.58 0.14 0.07 -0.37 0.76 0.87 0.85 -1.01 -0.9 -0.74 -1.75
AEA93220 (lyzl6)
0.0 0.1 0.14 -0.75 0.43 0.82 -0.58 -0.8 -1.07 -0.11 -0.38 -0.79 -0.26 -0.67 -0.29 1.92 -1.3 -1.35 -2.21 -1.01 -0.58 0.32 0.35 0.02 0.65 0.07 1.26 -0.4 -0.1 0.09 0.13 0.44 1.09 -0.85 -1.33 -1.37 -1.08 -0.12 0.69 0.48 0.64 -1.18 -0.22 -1.28
AEA93329 (rpmI)
1.1 1.46 1.43 -3.87 1.5 1.74 -1.74 -1.76 -2.13 -1.57 -1.11 -1.76 -0.54 -2.0 -1.35 -0.71 -0.38 -1.47 -3.32 -1.49 -0.51 -2.42 -1.69 0.81 0.44 0.52 0.88 -0.07 -2.06 0.09 -1.94 -2.03 -1.71 -0.32 0.05 -0.77 -0.51 1.31 1.48 1.4 -0.54 0.12 -0.23 -1.3
AEA93358 (OG1RF_10671)
0.06 1.23 1.02 -3.73 1.72 2.28 -0.38 -0.64 -0.89 -0.33 -0.1 -0.46 0.45 -0.42 -1.02 0.71 -1.09 -1.44 -2.4 -1.4 -0.57 -0.16 0.23 -1.1 0.53 1.09 0.58 -1.5 -1.09 -2.04 -1.51 -0.87 0.16 -0.02 -1.71 -1.1 -0.54 -1.11 -0.23 -0.27 1.12 -0.94 0.45 -1.73
AEA93375 (OG1RF_10688)
1.42 0.34 0.46 -1.3 1.03 1.62 -1.37 -0.74 -0.81 -1.34 -0.66 -0.84 -0.72 -0.71 0.27 -0.52 -0.47 -0.46 -1.0 -0.63 -0.73 -0.07 0.11 0.62 1.17 0.1 0.51 -0.08 -0.74 0.38 -0.61 -0.49 -0.21 -0.93 -0.89 -1.13 -0.61 0.22 1.07 1.01 -0.07 -0.87 -0.58 -0.56
AEA93559 (OG1RF_10872)
0.11 0.7 0.49 -2.61 -0.13 0.38 0.26 0.42 0.5 -0.12 0.3 0.01 -0.13 0.1 -2.36 -0.76 -0.7 -0.5 -3.52 -0.4 -0.42 0.05 -0.32 -0.09 -0.13 0.22 0.75 -0.39 0.34 -0.43 0.24 0.51 1.31 -0.23 -0.97 -0.72 -0.42 1.02 0.86 0.61 -0.72 -0.9 -0.48 -1.36
AEA93560 (OG1RF_10873)
0.64 1.2 1.52 -4.84 -0.87 0.05 0.64 0.22 0.05 -0.09 0.1 -0.09 0.05 0.26 -2.09 -1.71 -0.8 -0.66 -4.23 -0.42 -0.25 -0.6 -0.93 -0.03 -0.26 0.3 0.7 -0.6 0.7 -0.3 0.18 0.46 1.08 -0.16 -0.89 -0.74 -0.14 0.81 0.42 0.51 -0.69 -0.66 -0.55 -1.41
AEA93633 (murA)
0.39 0.11 0.06 -0.66 0.19 0.87 0.71 0.68 0.53 0.67 1.52 0.64 0.42 0.65 -0.76 -0.28 -1.28 -3.57 -3.17 -2.05 -1.03 0.39 0.52 -0.07 0.32 -0.13 0.88 -0.79 -0.18 -1.73 -0.62 0.22 -0.31 0.05 -0.6 -0.45 -0.13 -0.26 0.2 0.2 -1.0 -0.96 -0.69 -1.29
AEA93698 (OG1RF_11011)
0.53 0.5 0.51 -0.55 1.02 0.94 0.18 0.14 -0.0 -0.17 0.22 -0.1 -0.24 -0.06 0.54 0.9 -1.38 -0.47 -0.72 -0.4 -0.93 0.18 -0.1 -0.46 -0.1 -0.75 0.6 -0.74 -0.4 -0.9 0.42 0.03 0.26 -0.07 -0.42 -0.74 -0.63 -0.31 0.12 0.1 0.49 -0.82 -0.01 -0.72
AEA93715 (OG1RF_11028)
0.01 0.95 0.89 -2.65 0.68 1.16 -0.07 -0.13 -0.13 0.01 0.34 -0.11 0.12 -0.04 0.54 0.8 -0.14 -1.56 -2.58 -1.53 -1.91 -0.56 -0.71 -0.5 -0.27 -0.43 0.35 -0.11 0.19 0.46 -0.47 0.72 0.03 0.3 -0.05 0.08 0.35 0.05 0.19 -0.12 -0.06 -0.8 -0.69 -1.04
AEA93776 (OG1RF_11089)
-0.27 1.18 1.18 -0.0 1.0 1.18 -0.84 -0.73 -0.3 -0.73 -0.19 -0.22 -0.36 -0.59 -1.35 0.03 -0.27 -1.05 -3.02 -1.65 -1.12 -1.36 -0.96 -0.15 0.98 0.97 0.48 -0.53 0.04 0.04 -0.82 0.24 -0.5 -0.09 -0.12 -0.54 -0.34 0.69 1.23 1.39 -0.84 -1.12 -1.08 -2.01
AEA93845 (OG1RF_11158)
0.27 0.42 0.42 -1.34 2.02 1.53 -0.66 -0.88 -0.95 -0.78 0.09 -0.73 -0.02 -0.65 -0.12 -0.57 -0.6 -1.56 -1.88 -1.35 -0.96 -1.96 -1.72 -0.78 0.63 0.11 -0.2 -0.55 -0.53 -0.2 -1.12 -0.18 0.22 0.54 0.44 0.45 0.42 0.73 1.07 0.98 -0.38 -0.73 -0.09 -0.96
AEA93858 (OG1RF_11171)
0.26 -0.51 -0.42 -1.28 1.05 1.42 -0.48 -0.16 -0.7 0.44 0.82 -0.18 0.74 0.23 0.17 0.16 -2.32 -4.94 -3.81 -2.79 -2.04 0.12 0.1 -0.69 0.28 -0.14 0.68 -0.39 -0.46 -0.77 -0.11 -0.45 -0.0 0.87 -0.06 0.68 0.59 0.28 0.7 0.48 -0.4 -0.36 -0.31 -1.08
AEA93859 (OG1RF_11172)
0.23 0.6 0.49 -2.28 0.72 1.71 0.58 0.4 -0.12 0.59 1.1 0.52 0.94 0.4 -0.38 -0.15 -2.9 -4.24 -3.24 -3.19 -1.72 0.58 1.1 -1.03 -0.16 -0.4 0.32 -0.5 -0.12 -2.9 -0.65 0.48 -0.65 0.45 -0.56 -0.29 -0.08 0.03 0.41 0.22 -1.28 -1.16 -1.2 -1.95
AEA93917 (sacT)
0.2 -1.19 -1.51 -3.44 1.2 1.86 1.11 1.13 -0.05 0.9 1.52 1.05 1.52 1.07 -3.63 -1.71 -3.48 -5.59 -2.74 -3.95 0.62 1.4 1.51 -1.21 -1.26 -2.08 0.95 -1.88 -0.34 -1.97 -0.05 -0.15 -2.65 -0.3 -1.33 -0.97 -0.54 -1.25 -0.37 -0.78 -3.82 -2.23 -1.92 -3.29
AEA93932 (fur)
0.33 1.31 1.39 -3.24 0.75 1.26 -0.57 -0.62 -0.11 -0.32 0.11 -0.54 -0.36 -0.46 -1.34 -0.64 -1.7 -2.48 -2.44 -1.88 -1.17 -1.3 -1.11 -0.34 0.13 -0.59 -0.55 -1.16 0.1 0.0 -1.3 -0.16 0.93 0.81 0.06 -0.1 0.07 0.72 1.31 1.16 -0.56 -0.5 0.27 0.19
AEA93942 (OG1RF_11255)
1.17 0.23 0.22 -3.2 0.8 1.11 -0.02 -0.15 0.26 -0.12 1.05 0.07 0.09 0.17 -0.36 0.03 -0.7 -1.07 -2.49 -1.1 -1.99 -0.82 -0.73 0.04 0.5 0.64 0.63 -0.15 -0.2 0.51 -1.04 0.15 0.32 -0.24 -0.17 0.2 -0.11 0.31 0.53 0.37 -1.25 -1.33 -0.93 -1.29
AEA93989 (amiD3)
0.53 1.31 1.24 -0.77 0.37 0.99 0.72 0.54 0.4 0.95 0.73 0.7 1.02 0.75 -0.4 1.57 -2.07 -3.91 -3.21 -4.0 -1.39 -0.99 -0.7 -0.45 -0.08 -0.24 -0.48 -1.56 0.38 -1.39 -1.79 -0.71 -0.58 -0.19 -0.91 -0.74 -0.37 -0.79 0.03 -0.06 -0.36 -1.12 -0.3 -0.79
AEA94042 (plsY)
0.09 0.9 1.16 -2.73 1.09 0.98 0.54 0.41 -0.5 0.64 1.26 0.46 1.0 0.6 -0.9 1.01 -1.38 -4.41 -3.22 -3.67 -2.1 -0.91 -0.75 -0.89 0.31 0.41 0.78 -0.95 0.67 -0.71 -1.27 0.47 -0.67 0.02 -0.96 -0.55 -0.26 -0.24 0.25 0.18 -1.28 -1.68 -0.89 -1.92
AEA94063 (OG1RF_11376)
0.76 1.34 1.25 -1.51 0.62 0.61 -0.6 -0.55 -0.89 -0.36 0.03 -0.5 -0.4 -0.72 -2.55 -0.9 0.39 -1.08 -2.52 -2.25 0.53 -2.22 -2.25 0.06 1.15 0.42 -0.34 -0.79 0.59 0.29 -1.12 0.02 -0.59 -0.3 -0.52 -0.28 -0.41 0.49 1.14 1.23 0.13 -0.61 0.14 -0.42
AEA94340 (OG1RF_11653)
0.45 1.34 1.29 -1.04 0.82 1.63 -0.12 -0.34 -0.48 0.22 1.0 0.05 1.05 -0.24 -1.2 -0.4 -2.1 -4.77 -2.3 -2.76 -1.68 -0.05 0.26 -0.96 0.41 -0.53 -0.9 -1.26 0.14 -1.9 -2.18 -0.11 -0.95 0.39 -0.28 0.01 0.14 -0.1 0.94 1.22 -0.6 -1.65 -0.42 -0.34
AEA94428 (OG1RF_11741)
0.14 0.72 0.86 -2.69 -0.77 0.63 0.8 0.87 0.44 0.65 0.52 0.57 0.38 0.84 -0.42 0.1 -1.1 -3.52 -3.51 -4.31 -2.6 -1.35 -0.79 0.13 0.42 -0.19 0.64 -0.4 -0.61 -0.57 -1.06 -0.73 -0.05 0.94 -0.3 0.25 0.37 0.29 0.94 0.66 -0.89 -1.02 -0.86 -1.1
AEA94443 (OG1RF_11756)
0.63 1.18 0.97 -5.5 0.34 1.49 -0.18 -0.23 -0.3 0.03 0.97 -0.38 0.72 -0.14 -1.79 -0.81 -2.03 -4.29 -2.23 -1.98 -0.91 1.02 1.29 -0.0 0.38 0.17 0.05 -0.91 -1.01 -1.57 -1.81 -0.6 -1.32 0.34 -0.16 -0.13 0.09 0.42 0.94 0.9 -0.93 -1.02 -0.4 -1.15
AEA94882 (OG1RF_12195)
-0.52 0.61 0.71 -1.28 1.51 1.54 0.37 0.14 0.57 -0.19 0.19 0.28 0.12 0.34 -0.6 -0.5 -0.73 -2.19 -1.93 -2.59 -2.68 1.47 1.54 -0.76 -0.63 -0.08 -1.35 0.18 -0.64 -1.52 -2.98 -1.48 -0.11 0.41 -0.1 0.38 0.47 -0.78 -0.39 -0.39 -0.15 -0.2 -0.65 -1.08
AEA94901 (greA)
0.06 0.71 0.74 -1.51 0.47 0.65 0.36 0.29 1.36 0.43 0.19 0.43 -0.08 0.4 -1.28 -0.65 -0.74 -0.9 -2.12 -1.13 -1.36 0.64 0.46 0.24 0.04 0.09 0.42 -0.59 0.08 -0.49 -0.84 0.02 -0.27 -0.42 -0.38 -0.04 0.04 0.23 0.18 0.14 -0.26 -0.66 -0.79 -0.85
AEA94909 (OG1RF_12222)
0.52 0.63 -0.49 -3.41 1.09 0.89 0.19 -0.13 0.23 -0.29 0.48 -0.62 -0.15 0.29 -1.54 -1.77 0.4 -1.21 -0.91 -1.25 -0.79 -1.75 -1.6 0.88 0.8 0.55 0.33 -1.46 -0.98 -0.38 -1.61 -2.2 -0.18 -0.05 -0.21 -0.04 0.2 0.92 1.42 1.24 0.18 -0.67 -0.33 -0.62
AEA94921 (thiI)
0.27 0.41 0.36 -3.16 0.71 0.85 0.33 0.44 0.08 0.45 0.76 0.21 0.8 0.21 -1.08 0.37 -0.56 -2.18 -2.63 -1.29 -1.89 -0.13 -0.1 -0.46 0.5 0.47 0.77 -0.49 -0.01 -0.72 -0.76 0.6 0.06 0.14 -0.56 -0.01 0.01 0.07 0.28 0.24 -0.3 -0.79 -0.49 -1.04
AEA95025 (OG1RF_12338)
-0.19 -0.58 -0.85 -2.86 2.07 2.03 0.12 -0.04 -0.03 -0.32 0.12 -0.49 0.29 -0.08 -2.53 -0.71 -1.15 -4.06 -3.56 -4.02 -0.87 1.26 1.21 0.46 0.4 0.35 0.39 -0.1 -0.53 -1.98 -1.07 -0.34 0.31 0.0 -0.78 -0.89 -0.48 0.43 0.89 0.99 -1.37 -1.1 -1.79 -2.82
AEA95026 (OG1RF_12339)
-0.48 0.47 0.47 -3.42 2.02 1.91 0.13 0.03 -0.26 -0.34 -0.37 0.0 -0.29 0.28 -1.16 0.58 -0.07 -3.8 -4.4 -3.59 -2.36 -0.34 -0.65 -0.67 0.46 1.59 0.33 -0.63 -0.47 -1.6 -1.55 0.07 0.68 0.2 -0.92 -0.22 -0.16 -0.08 -0.2 -0.24 0.31 -0.32 -0.49 -0.85
AEA95048 (OG1RF_12361)
-0.17 1.09 0.98 -5.44 0.86 0.71 0.74 0.62 0.83 0.49 0.88 0.35 0.07 0.52 -2.07 -0.35 -0.98 -1.73 -2.02 -0.44 -2.5 -0.75 -0.86 0.13 0.13 -0.23 0.33 -0.72 0.2 -0.76 -0.13 0.34 0.78 -0.16 -0.6 -0.54 -0.08 -0.02 0.38 0.11 -1.3 -0.52 -0.55 -0.9
AEA95058 (acpP2)
-0.7 0.0 -0.04 0.12 1.25 0.76 0.14 -0.1 0.47 0.16 -0.11 0.28 0.08 0.18 -0.58 -1.02 -0.53 -1.25 -1.92 -1.67 -0.99 1.56 1.97 -1.47 -1.32 -0.88 -0.86 -0.43 -0.41 -1.62 -1.1 -0.08 0.29 0.94 1.02 0.73 1.13 -1.12 -1.09 -0.99 -1.04 -1.45 -1.17 -1.6
AEA95079 (OG1RF_12392)
0.34 0.29 0.34 0.22 1.33 0.85 -0.13 -0.24 -0.33 0.0 0.08 -0.14 -0.34 -0.21 -0.3 0.85 -0.47 -1.02 -0.09 -0.36 -1.25 0.09 -0.32 0.11 0.17 0.24 0.0 -0.46 0.05 -0.29 -0.41 0.51 0.01 -0.41 -0.47 -0.6 -0.53 0.14 0.06 -0.12 0.64 -0.31 -0.4 -0.71
AEA95114 (OG1RF_12427)
-1.38 -3.12 - 2.73 4.06 3.02 - - - - - - - - - - -4.89 -4.29 -0.63 -1.7 -4.19 - -5.46 -3.81 - -2.78 -5.29 -4.37 - - -6.75 - - -3.23 -3.74 -2.66 -2.91 -2.19 -3.33 -3.27 2.42 0.59 0.79 0.2

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.