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Heatmap: Cluster_12 (HCCA)

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(Showing raw values)

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Gene
11168-O,WT,biofilm extract
11168-O,WT,planktonic cell extract
CG8433,WT,mid-log,Mueller Hinton agar plate
CG8433,WT,mid-log,Mueller Hinton broth
CG8433,WT,mid-log,blood agar plate
NCTC11168,CRISPR-tracrRNA-KO
NCTC11168,WT
NCTC11168,WT,Fe limited
NCTC11168,WT,Fe replete
NCTC11168,WT,chicken intestinal mucus
NCTC11168,WT,cow intestinal mucus
NCTC11168,WT,defined media
NCTC11168,WT,pig intestinal mucus
NCTC11168,WT,sheep intestinal mucus
NCTC11168,WT,turkey intestinal mucus
NCTC11168,cas9-KO
NCTC11168,crRNA3-KO
NCTC11168,fur-KO,Fe limited
NCTC11168,fur-KO,Fe replete
NCTC11168,fur-KO,perR-KO,Fe limited
NCTC11168,fur-KO,perR-KO,Fe replete
NCTC11168,perR-KO,Fe limited
NCTC11168,perR-KO,Fe replete
NCTC11168,tracrRNA-KO
NCTC12661,WT,exponential,spiral
NCTC12661,WT,stationary,filamentous
NCTC12661,WT,stationary,spiral
PT14,WT,exponential,spiral
PT14,WT,stationary,filamentous
PT14,WT,stationary,spiral
Sheep Abortion,WT,24h bile inoculate
Sheep Abortion,WT,24h gallbladder inoculate
Sheep Abortion,WT,2h bile inoculate
Sheep Abortion,WT,2h gallbladder inoculate
Sheep Abortion,WT,laboratory culture
AHY39289 (CJ8421_00060)
 1213.41 15739.8 2245.81 8419.7 14083.05 1185.67 1184.98 108.54 11690.43 401.64 12557.52 1039.35 8514.74 6004.41 723.24 1022.79 1258.36 1908.88 386.24 2302.82 19616.5 1018.07 22637.8 1041.5 3216.08 124.15 830.08 7242.28 432.39 789.82 6146.92 2684.23 7444.4 5548.84 3952.49
AHY39343 (CJ8421_00360)
 1256.0 2213.09 1951.24 1952.66 1361.21 322.77 285.25 734.52 1025.51 631.16 739.84 466.01 598.06 628.36 836.35 241.5 382.11 484.27 1121.35 384.64 770.94 737.24 748.01 291.12 405.36 431.12 1290.16 286.46 184.64 200.66 1457.52 488.55 2831.8 1666.64 2157.54
AHY39361 (CJ8421_00450)
 3160.89 4893.23 6632.91 14827.4 3027.23 203.25 297.53 2826.79 8497.83 2470.41 6108.59 1326.32 5262.83 4751.14 3665.55 205.85 201.87 1507.73 8331.01 1283.12 5161.8 1581.71 3040.4 120.63 1037.82 610.13 2413.63 574.76 593.12 642.83 4934.53 2005.26 8473.86 5575.36 5680.69
AHY39368 (rpmA)
 9319.46 8295.51 5214.5 3110.63 3631.55 4731.09 2932.07 4379.05 3340.71 3400.95 2938.66 5423.81 2458.74 3079.51 3041.5 3071.52 4528.07 5856.95 3001.15 6305.71 3789.14 5296.95 3589.28 4193.87 7287.56 18819.06 6344.5 5850.55 20649.31 21234.25 3443.77 2264.71 2804.16 3250.73 3260.99
AHY39419 (CJ8421_00750)
 627.71 2542.68 13353.57 7129.44 12982.33 5988.43 4868.2 10359.14 4168.42 8095.57 5125.27 8041.86 5518.69 4945.32 6739.23 4141.72 5337.24 10713.88 4177.47 9068.63 4810.11 13267.17 8527.48 4852.83 16932.08 12103.27 14117.63 18362.67 10701.12 12071.91 7529.7 5433.76 7800.64 6745.05 10996.72
AHY39494 (pyrE)
 292.6 312.47 803.8 369.08 358.56 481.67 478.17 1459.19 694.48 507.25 520.73 976.55 546.02 555.79 363.76 395.33 514.12 1199.8 690.84 1288.4 719.13 932.36 628.05 467.46 2075.97 2348.14 1895.36 3162.6 2225.88 1664.76 975.64 1799.22 570.52 1377.32 903.57
AHY39505 (rplT)
 285.32 204.95 4182.36 1883.48 2178.49 1416.6 1433.22 2711.52 1695.28 976.36 780.28 2077.2 754.74 760.41 605.45 1137.74 1255.23 3857.15 1336.67 4889.66 2407.01 2188.15 1644.25 1686.05 3508.99 4510.08 2357.17 4062.04 8719.51 8334.84 1763.52 1379.82 1392.46 2207.6 2046.71
AHY39589 (flhB)
 449.5 106.37 65.65 44.83 31.83 138.25 115.0 197.36 79.47 34.46 71.56 82.75 64.04 60.47 30.79 93.27 140.51 168.72 74.92 239.91 113.4 140.28 72.51 120.61 216.49 106.6 150.99 457.49 1068.66 518.96 168.34 684.88 94.22 448.34 167.76
AHY39614 (CJ8421_01795)
 260.25 962.0 5204.88 9528.12 1570.81 320.2 375.56 104.42 11181.03 1891.54 9981.34 2162.88 6985.46 10005.23 3883.39 360.22 434.01 127.19 5632.51 95.83 6117.35 179.09 6397.49 343.39 471.71 804.9 1362.52 115.05 156.91 188.26 1417.98 950.62 2020.3 1761.23 1502.03
AHY39626 (rpsU)
 2091.9 2105.86 35315.83 83099.2 35073.93 42409.3 63600.2 40017.53 115482.7 42853.47 55700.62 21137.8 44176.65 91585.57 92551.25 81097.7 43427.0 48039.53 113221.33 39122.43 74778.17 26360.83 41870.27 45712.2 33409.15 59338.74 35198.55 16357.08 22784.33 21327.94 33201.57 10209.1 31704.17 22434.05 37963.57
AHY39635 (CJ8421_01900)
 186.64 52.1 537.76 188.08 608.77 36.0 32.57 1996.12 63.09 1092.25 136.64 611.79 135.92 167.9 901.38 26.41 37.34 1793.08 67.31 1729.42 696.06 1653.4 928.84 33.68 611.39 1466.83 1206.73 2214.59 917.53 1124.74 584.02 588.94 939.7 977.66 1251.62
AHY39664 (CJ8421_02045)
 636.59 4856.88 2928.07 3951.76 2421.69 561.57 552.9 599.16 3616.39 1025.29 1127.18 1435.62 907.28 1086.52 901.71 651.22 615.02 544.54 3108.61 502.53 2122.06 1065.34 2317.94 531.83 1134.29 2149.71 1554.16 1243.58 958.25 959.52 2963.5 2025.14 2581.22 2735.76 2350.7
AHY39665 (CJ8421_02050)
 1482.74 5561.91 4178.02 5980.93 3647.95 351.27 384.11 440.32 3103.65 1057.7 2726.71 974.2 1794.98 2256.04 2009.32 310.83 378.11 384.48 2456.89 367.41 1670.87 649.31 1916.9 336.11 753.91 1225.15 1296.64 650.58 669.67 538.75 2908.73 1302.58 4214.98 2429.03 2156.05
AHY39666 (frdB)
 1249.64 4514.55 5779.2 8682.1 6054.66 672.03 772.89 996.25 6179.5 3017.73 6996.72 2125.23 5939.95 5691.23 4807.01 716.76 761.35 1032.75 5292.42 977.6 3828.33 1402.37 3678.16 689.16 2802.74 3944.1 5823.24 1692.79 2014.14 1655.29 3368.68 1693.33 7019.15 4241.11 4224.0
AHY39693 (CJ8421_02190)
 304.78 757.78 627.1 1295.59 97.27 72.38 76.13 14.73 782.23 37.33 178.44 102.53 139.42 151.03 86.28 60.6 111.85 12.38 527.78 11.03 349.92 12.56 312.72 71.67 113.3 32.81 83.99 35.88 26.85 46.45 177.57 300.94 276.39 853.18 108.86
AHY39694 (CJ8421_02195)
 375.99 512.43 938.41 2276.89 201.24 43.93 57.25 19.35 1030.84 70.9 394.91 115.74 291.13 305.57 174.72 43.3 79.58 14.29 673.57 14.91 459.84 15.87 404.41 40.35 148.29 63.4 151.22 57.57 42.89 84.52 179.34 247.18 314.05 653.61 112.04
AHY39695 (CJ8421_02200)
 130.41 392.39 984.08 2468.17 206.16 58.8 75.45 75.05 1838.57 100.17 468.59 205.12 401.55 462.2 191.95 60.77 131.91 57.59 1212.47 49.63 827.11 53.81 733.85 54.49 237.65 108.54 349.95 194.92 90.73 162.82 191.12 264.93 296.84 616.49 201.59
AHY39724 (rpmG)
 0.0 4.35 0.0 0.0 0.0 772.44 1281.24 1801.37 4846.3 3904.45 5648.62 6512.95 7119.93 5154.08 5705.91 965.6 700.91 2419.76 3925.36 2766.06 4370.17 1594.83 3831.99 1232.68 2609.22 855.48 2444.81 3224.99 4067.14 4040.23 1785.01 4716.49 1845.17 3522.08 2176.1
AHY39754 (CJ8421_02515)
 403.01 341.1 545.64 460.34 255.41 149.29 126.35 574.83 644.36 577.69 307.54 843.07 331.89 345.3 314.15 117.12 183.3 617.07 570.93 531.79 545.36 630.82 629.81 143.99 530.14 412.79 689.98 392.18 298.56 203.85 487.22 349.24 378.53 433.8 481.8
AHY39755 (CJ8421_02520)
 466.99 390.91 348.07 229.97 119.1 295.31 254.98 1280.15 1287.74 1112.86 212.06 1693.62 337.75 383.31 196.54 194.76 244.72 1393.96 1182.04 1250.47 1233.77 1240.9 1205.46 269.41 763.38 538.36 850.5 521.54 485.67 295.27 845.91 622.58 440.59 630.49 806.12
AHY39756 (CJ8421_02525)
 264.82 149.46 311.32 195.56 127.25 114.65 107.99 400.06 438.58 296.75 221.72 528.19 230.76 246.79 180.3 93.51 121.58 460.95 418.34 437.69 467.37 360.45 387.02 110.7 365.54 242.98 441.15 261.18 221.44 100.0 291.52 180.7 232.65 324.57 380.77
AHY39776 (oorB)
 1904.37 1684.05 4659.05 5013.28 2958.93 369.17 416.86 502.04 1598.66 783.01 1586.12 745.32 1116.65 1468.76 1415.25 329.89 401.59 459.1 1559.8 496.63 1349.57 776.72 1499.08 340.18 951.18 1613.15 1673.13 283.94 125.4 118.62 3266.84 686.76 3602.64 2062.75 3014.9
AHY39798 (CJ8421_02735)
 305.16 636.44 1013.49 478.57 1262.08 274.22 230.26 1633.88 507.35 1377.13 843.91 1189.76 861.52 995.51 1509.69 193.63 274.11 1490.37 887.12 1355.98 830.1 1803.2 994.88 249.6 985.77 1922.43 1309.29 1560.55 973.45 1032.81 1441.94 809.34 1402.94 769.82 1871.04
AHY39849 (CJ8421_02990)
 467.26 3754.75 2470.87 2341.39 3896.39 955.79 820.01 5978.66 4407.98 6144.1 4549.12 5052.03 5174.34 4857.61 4805.13 867.65 898.66 4812.33 4333.58 3135.4 2994.84 9091.94 5495.01 848.85 4174.57 7864.08 3684.64 2921.1 2523.34 2536.81 3710.12 1769.9 3059.82 1917.93 3505.2
AHY39967 (CJ8421_03690)
 62.66 10.27 0.0 0.0 0.0 0.0 0.95 11.13 0.66 0.32 1.61 3.07 0.9 1.61 0.0 0.0 0.92 23.67 1.97 23.5 2.35 9.96 3.92 1.17 2.15 0.0 0.0 3.43 13.7 7.5 0.0 278.17 1.62 9.8 0.0
AHY39968 (CJ8421_03695)
 27.28 2.28 0.65 0.23 0.37 1.35 0.67 5.87 1.23 0.67 0.24 2.47 0.0 0.33 0.1 0.58 3.23 11.24 1.41 10.02 1.57 3.38 1.46 1.65 2.87 0.0 0.0 5.93 17.35 18.73 2.58 47.64 1.31 3.56 0.27
AHY39974 (CJ8421_03725)
 197.4 137.39 109.53 59.27 79.11 129.94 91.79 146.24 94.02 91.89 133.73 130.16 201.23 113.95 80.58 99.36 119.91 140.5 92.14 180.61 115.02 93.08 85.65 99.55 162.36 8.24 14.9 122.05 546.23 373.79 361.76 654.15 336.06 709.16 215.46
AHY39975 (CJ8421_03730)
 81.44 63.9 81.27 45.46 36.43 185.01 163.91 159.68 117.92 52.6 18.91 147.32 52.05 40.32 18.45 127.99 184.0 177.21 108.59 215.38 123.54 131.57 121.63 150.87 193.32 28.92 42.69 178.53 599.66 439.28 188.9 429.28 144.84 443.51 152.42
AHY39994 (CJ8421_03825)
 1152.91 5089.35 2950.7 5489.55 2154.2 167.33 200.93 514.99 1876.71 651.26 2841.35 2580.11 2732.94 2254.5 1504.4 188.43 187.53 434.62 1213.03 464.91 1235.83 728.59 1648.4 188.87 945.67 940.33 895.64 1035.6 665.2 500.87 1972.17 1195.29 2103.87 1372.18 1833.06
AHY39995 (napG)
 978.16 1716.81 1847.13 3690.55 1038.49 135.96 145.94 193.39 1258.8 202.34 1419.28 1432.57 1179.72 1000.98 556.83 141.33 172.05 178.86 758.15 218.11 875.38 259.94 968.05 130.81 540.01 355.44 534.59 424.43 270.9 140.34 1155.04 616.78 1024.01 939.08 746.7
AHY39996 (napH)
 484.94 854.38 391.72 721.36 128.95 85.81 121.14 68.42 611.01 37.19 216.96 692.9 140.16 172.94 71.59 95.52 112.14 77.33 334.3 94.24 393.29 104.84 434.25 96.71 244.45 159.84 220.49 157.69 117.83 47.65 439.9 269.72 234.57 315.15 169.09
AHY39997 (CJ8421_03840)
 659.32 1534.65 1673.65 3532.33 667.1 183.13 189.94 181.1 1251.39 242.42 1481.74 1391.59 1457.67 1168.8 597.74 158.16 216.12 235.82 737.85 274.56 804.77 274.01 1014.93 157.9 495.49 376.73 517.3 424.97 306.18 212.69 1155.88 478.7 839.99 802.27 729.51
AHY40090 (CJ8421_04335)
 182.58 517.82 139.6 153.48 407.69 165.23 133.37 494.5 210.5 446.05 649.98 481.52 701.95 520.82 428.3 105.56 194.99 376.78 220.56 337.22 192.49 426.89 212.07 96.68 638.72 1541.84 380.09 1428.66 617.47 570.65 152.93 271.24 140.38 255.98 244.43
AHY40092 (CJ8421_04345)
 24.33 21.5 0.0 0.0 0.0 45.28 52.36 2585.04 957.69 3738.72 5046.85 1933.93 5549.9 4505.33 4485.78 58.6 72.16 1790.86 991.81 1529.72 678.23 3004.3 1705.05 55.33 4429.91 11684.33 2942.12 8587.9 3183.33 5423.35 2149.23 2369.42 3237.41 1827.08 1614.02
AHY40174 (CJ8421_04755)
 177.51 401.58 441.55 160.9 141.74 327.58 486.07 534.12 1024.33 283.67 38.66 1520.01 62.34 54.92 28.96 317.1 319.29 766.07 922.25 1100.33 1140.37 444.43 695.93 268.61 1329.02 746.52 1165.91 939.72 2193.98 1472.58 798.2 1979.87 312.42 943.68 616.53
AHY40278 (rpsR)
 4576.23 1163.96 2241.87 1974.23 1150.11 1367.14 1295.29 2136.55 2217.21 3460.39 2277.5 3200.83 2344.05 2476.93 2726.55 1087.53 1362.99 2936.84 1603.42 2848.8 3065.8 2640.85 3089.66 1601.6 3954.4 6844.18 4052.96 2832.53 6321.36 6420.09 1875.81 2286.18 1792.13 3231.72 2143.42
AHY40428 (CJ8421_06105)
 294.11 744.94 323.3 319.08 493.92 327.54 311.08 442.24 724.22 1058.57 790.2 462.03 657.24 855.6 841.63 352.12 326.58 474.74 615.81 455.13 508.0 1178.1 862.71 296.01 304.85 872.2 136.82 299.18 378.68 302.66 367.5 378.63 272.97 269.79 276.98
AHY40429 (CJ8421_06110)
 66.09 324.89 341.09 321.92 322.92 1082.56 923.23 862.59 1208.83 1124.14 364.73 930.34 404.97 801.96 490.3 1011.96 1301.61 1019.36 1045.4 830.23 785.57 2054.16 1451.54 852.02 888.55 2464.16 504.47 856.39 1101.32 1644.12 279.82 474.16 225.17 261.05 485.12
AHY40454 (CJ8421_06235)
 617.25 1227.7 765.31 497.86 1077.3 298.22 251.15 1867.87 702.67 1720.51 2255.71 1431.77 2576.34 2083.23 1936.95 243.67 314.76 1327.33 636.22 1376.3 602.74 1169.76 570.33 274.58 1656.62 2129.62 1507.75 1632.45 1494.95 1323.66 991.45 1758.15 913.93 1147.04 754.86
AHY40491 (CJ8421_06420)
 105.05 328.01 258.98 182.03 190.93 225.62 212.2 646.34 513.81 404.94 338.8 658.94 382.42 435.87 355.59 209.56 223.47 700.32 496.76 544.77 403.41 587.54 389.72 191.02 385.38 312.95 432.56 329.25 250.8 201.67 337.32 271.18 296.52 331.41 303.41
AHY40539 (CJ8421_06740)
 450.23 176.56 248.37 296.0 371.47 156.82 121.83 807.44 287.24 407.71 479.41 441.21 534.98 427.06 333.87 112.12 158.93 569.05 285.45 601.76 226.25 243.33 127.15 132.9 536.86 805.11 537.84 690.85 554.31 606.33 347.52 307.11 278.3 259.69 330.28
AHY40552 (CJ8421_06805)
 351.4 519.77 427.99 791.54 257.36 15.08 17.49 49.4 1860.06 370.55 1687.13 1032.7 1274.81 1660.28 609.84 14.96 16.58 53.11 1546.7 51.97 877.99 103.44 1798.01 19.32 625.21 269.29 267.3 320.32 325.16 346.42 434.35 488.84 307.17 471.83 118.8
AHY40553 (CJ8421_06810)
 422.71 644.48 561.83 1113.64 313.23 21.3 21.95 62.78 2280.55 492.06 2317.05 960.05 1786.86 2141.16 830.21 15.43 26.27 67.78 1969.15 65.39 1138.61 139.56 1829.88 32.78 826.62 411.23 357.3 413.32 313.84 319.73 455.64 680.42 368.01 518.94 83.5
AHY40666 (CJ8421_07445)
 1231.14 1247.17 1695.91 2339.2 1047.73 284.87 240.03 534.0 2054.55 1007.0 1452.65 1103.62 1092.58 1217.37 1097.58 218.97 294.99 588.26 1866.06 612.43 1574.09 692.49 2065.89 264.82 649.93 612.48 671.09 523.45 586.17 302.94 1192.9 675.89 1057.88 1137.24 996.64
AHY40675 (CJ8421_07490)
 175.74 120.51 93.98 83.84 58.25 179.39 161.19 179.41 139.61 187.52 250.34 217.58 247.67 278.23 184.02 132.05 167.06 187.27 129.91 204.68 148.91 191.47 121.41 178.92 221.88 280.71 196.98 259.94 300.09 292.44 194.79 446.29 174.13 253.35 225.3
AHY40708 (CJ8421_07670)
 338.57 5626.25 11815.43 11193.87 10471.27 1567.86 1046.94 22419.1 11027.41 25660.12 8216.62 13104.81 9430.22 10012.12 20755.35 1003.27 1696.46 21971.4 10776.23 16827.17 16416.7 21207.93 16438.23 1196.7 15714.47 41475.28 14786.31 35343.82 20236.51 23253.58 16060.9 18118.25 15864.97 13168.52 19416.95
AHY40714 (CJ8421_07700)
 323.2 291.11 569.51 351.41 542.37 201.59 184.12 1357.76 1895.74 1834.9 2233.21 970.84 2085.46 2001.45 1804.09 151.45 152.23 997.77 1776.81 1090.56 1771.89 1920.07 2073.07 169.19 814.2 1935.25 853.61 865.48 946.98 1263.75 1121.79 254.67 1819.96 914.96 1562.53
AHY40736 (CJ8421_07820)
 309.89 910.78 495.48 447.56 361.69 54.12 51.93 1382.88 1347.73 1484.7 648.32 2285.92 793.33 1007.07 813.41 43.24 52.18 1493.24 1336.04 1467.59 1285.89 2045.0 1491.79 40.79 1447.49 941.82 1384.34 898.45 545.37 342.81 1502.45 1168.48 1058.12 1205.27 907.39
AHY40770 (hisG)
 154.3 141.18 468.86 315.47 367.49 188.88 178.3 582.63 452.56 410.29 446.99 589.08 450.14 417.54 410.82 184.76 203.5 549.13 449.48 526.32 412.34 518.4 403.91 177.92 711.87 801.74 942.15 1062.83 804.19 970.66 511.98 903.23 748.3 721.93 647.24
AHY40771 (hisD)
 298.65 140.91 577.08 406.84 288.88 123.7 110.56 399.35 319.35 292.88 331.41 360.15 328.62 301.02 274.07 87.87 117.24 398.34 333.93 379.78 305.57 367.1 299.81 114.0 475.69 458.91 668.09 683.39 489.95 434.36 390.57 414.87 522.91 546.65 528.69
AHY40796 (CJ8421_08120)
 40.45 19.28 53.13 14.66 17.16 68.38 56.39 115.11 32.91 10.93 14.52 80.97 12.16 14.58 9.58 58.1 73.32 102.87 28.64 133.26 32.06 75.13 18.67 71.07 67.51 133.87 36.23 55.56 185.58 115.02 38.44 435.16 15.78 64.71 11.73
AHY40883 (rpsQ)
 2633.24 463.5 1458.0 1737.91 454.46 837.72 1300.66 922.9 1476.91 668.02 411.05 1438.98 473.25 718.49 380.86 900.63 559.03 1440.59 948.91 1731.28 1849.68 690.04 1751.38 977.73 1499.86 2561.46 1029.57 1037.88 4105.03 3049.78 916.22 1217.92 1341.37 1495.18 969.87
AHY40900 (CJ8421_08640)
 44.98 141.64 22.55 15.32 14.47 73.67 71.53 512.53 128.09 55.4 18.52 224.24 35.16 31.34 17.42 60.32 65.95 467.1 124.86 431.84 130.59 390.57 126.71 77.38 405.01 697.26 323.34 434.06 484.12 666.21 147.67 505.49 65.65 184.95 48.53

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)