AAC75626 (rpoE, b2573)


Aliases : rpoE, b2573

Description : RNA polymerase sigma E factor [Ensembl]. Sigma-70 region 2 [Interproscan].


Gene families : OG_02_0000184 (OrthoFinder) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAC75626
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AAL21534 STM2640, rpoE sigma E (sigma 24) factor of RNA polymerase [Ensembl].... 0.1 OrthoFinder
AGT23117 N559_1355, RpoE RNA polymerase sigma factor RpoE [Ensembl]. 0.06 OrthoFinder
CRN89911 rpoE_1 Sigma-24 [Ensembl]. Sigma-70 region 2 [Interproscan]. 0.03 OrthoFinder
KNA51127 VCV51_033628, RpoE RNA polymerase sigma factor RpoE [Ensembl]. Sigma-70... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003714 transcription corepressor activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009271 phage shock IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0009615 response to virus IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016989 sigma factor antagonist activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
BP GO:0043165 Gram-negative-bacterium-type cell outer membrane assembly IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055070 copper ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071709 membrane assembly IEP Enrichment
BP GO:0098586 cellular response to virus IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 25 91
IPR013249 RNA_pol_sigma70_r4_t2 129 180
UniProtKB P0AGB6