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  5. AAC77136

AAC77136 (rnr, b4179)


Aliases : rnr, b4179

Description : exoribonuclease R, RNase R [Ensembl]. RNB domain, Cold shock domain, S1 RNA binding domain, Ribonuclease B OB domain, Ribonuclease R winged-helix domain [Interproscan].


Gene families : OG_02_0000589 (OrthoFinder) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAC77136
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
AAL23188 STM4368, vacB putative exoribonuclease [Ensembl]. RNB domain, Cold... 0.13 OrthoFinder
CRO54097 rnr Ribonuclease R [Ensembl]. RNB domain, Cold shock domain,... 0.03 OrthoFinder
EDJ91637 CGSHi22421_07778 23S rRNA (guanosine-2'-O-)-methyltransferase [Ensembl].... 0.03 OrthoFinder
KNA54969 VCV51_033153 ribonuclease R [Ensembl]. RNB domain, Cold shock domain,... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013668 RNase_R_HTH_12 23 83
IPR013223 RNase_B_OB_dom 87 144
IPR003029 S1_domain 641 724
IPR040476 CSD2 164 238
IPR001900 RNase_II/R 260 587
UniProtKB P21499