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  5. EDJ91000

EDJ91000 (CGSHi22421_02721)


Aliases : CGSHi22421_02721

Description : 16S pseudouridylate 516 synthase [Ensembl]. S4 domain, RNA pseudouridylate synthase [Interproscan].


Gene families : OG_02_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ91000
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AAC75244 rsuA, b2183 16S rRNA pseudouridine(516) synthase [Ensembl]. S4... 0.04 OrthoFinder
AGT23383 N559_1637 16S rRNA pseudouridylate synthase A [Ensembl]. S4 domain... 0.05 OrthoFinder
AKP14134 rluB, WX61_00045 Ribosomal large subunit pseudouridine synthase B... 0.05 OrthoFinder
CCG27711 No alias Ribosomal large subunit pseudouridine synthase B... 0.04 OrthoFinder
KNA51668 VCV51_031493 RNA pseudouridylate synthase [Ensembl]. S4 domain, RNA... 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004325 ferrochelatase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
BP GO:0006308 DNA catabolic process IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Enrichment
MF GO:0008829 dCTP deaminase activity IEP Enrichment
CC GO:0009318 exodeoxyribonuclease VII complex IEP Enrichment
CC GO:0009349 riboflavin synthase complex IEP Enrichment
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
MF GO:0016744 transketolase or transaldolase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
BP GO:0019692 deoxyribose phosphate metabolic process IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
MF GO:0070402 NADPH binding IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 1 47
IPR006145 PsdUridine_synth_RsuA/RluA 62 192
No external refs found!