EDJ91360 (CGSHi22421_04633)

Aliases : CGSHi22421_04633

Description : 30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal protein S3 [Interproscan].

Gene families : OG_02_0000568 (OrthoFinder) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: EDJ91360
Cluster	HCCA: Cluster_17

Target	Alias	Description	ECC score	Gene Family Method
AAC76339	rpsC, b3314	30S ribosomal subunit protein S3 [Ensembl]. KH domain,...	0.3	OrthoFinder
AAK98999	spr0195, rpsC	30S Ribosomal protein S3 [Ensembl]. KH domain, Ribosomal...	0.25	OrthoFinder
AAL22297	STM3434, rpsC	30S ribosomal subunit protein S3 [Ensembl]. KH domain,...	0.34	OrthoFinder
ADK86863	rpsC, MPNE_0200	ribosomal protein S3 [Ensembl].	0.16	OrthoFinder
AEA92844	rpsC, OG1RF_10157	30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal...	0.27	OrthoFinder
AGT22248	N559_0440	30S ribosomal protein S3 [Ensembl]. KH domain,...	0.2	OrthoFinder
AHY40886	rpsC, CJ8421_08570	30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal...	0.26	OrthoFinder
AKI50561	rpsC, L2625_02771	ribosomal protein S3 [Ensembl]. Ribosomal protein S3, K...	0.19	OrthoFinder
AKP15129	rpsC, WX61_01075	30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal...	0.12	OrthoFinder
CBI65723	rpsC, HPB8_166	small subunit ribosomal protein S3 [Ensembl]. KH domain,...	0.16	OrthoFinder
CCG27385	No alias	SSU ribosomal protein S3p (S3e) [Ensembl]. KH domain,...	0.17	OrthoFinder
CCL20569	rpsC, BN171_70009	30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal...	0.26	OrthoFinder
CRO73930	rpsC	30S ribosomal protein S3 [Ensembl]. KH domain, Ribosomal...	0.24	OrthoFinder
KNA54978	VCV51_033161	ribosomal protein S3 [Ensembl]. KH domain, Ribosomal...	0.26	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005840	ribosome	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
BP	GO:0009061	anaerobic respiration	IEP	Enrichment
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Enrichment
BP	GO:0017013	protein flavinylation	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment
MF	GO:0097747	RNA polymerase activity	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR004044	KH_dom_type_2	38	111
IPR001351	Ribosomal_S3_C	120	202

External Links

No external refs found!

EDJ91360 (CGSHi22421_04633)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation