EDJ91371 (rplF, CGSHi22421_04688)


Aliases : rplF, CGSHi22421_04688

Description : 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6 [Interproscan].


Gene families : OG_02_0000395 (OrthoFinder) Phylogenetic Tree(s): OG0000395_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ91371
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AAC76330 rplF, b3305 50S ribosomal subunit protein L6 [Ensembl]. Ribosomal... 0.32 OrthoFinder
AAK99008 spr0204, rplF 50S Ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.27 OrthoFinder
AAL22288 STM3425, rplF 50S ribosomal subunit protein L6 [Ensembl]. Ribosomal... 0.35 OrthoFinder
ADK87044 rplF, MPNE_0209 ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.2 OrthoFinder
AEA92853 rplF, OG1RF_10166 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.26 OrthoFinder
AGT22257 N559_0449 50S ribosomal protein L6 [Ensembl]. alpha-beta domain... 0.15 OrthoFinder
AHY40877 rplF, CJ8421_08525 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.29 OrthoFinder
AKI50552 rplF, L2625_02762 ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.23 OrthoFinder
AKP15138 rplF, WX61_01084 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.13 OrthoFinder
CBI65732 rplF, HPB8_175 large subunit ribosomal protein L6 [Ensembl]. Ribosomal... 0.15 OrthoFinder
CCG27394 No alias LSU ribosomal protein L6p (L9e) [Ensembl]. Ribosomal... 0.18 OrthoFinder
CCL20578 rplF, BN171_70018 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.25 OrthoFinder
CCP43463 rplF, Rv0719 50S ribosomal protein L6 RplF [Ensembl]. Ribosomal... 0.1 OrthoFinder
CPD14024 rplF, ERS093114_02137 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.3 OrthoFinder
CRO74186 rplF 50S ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.22 OrthoFinder
KNA54987 VCV51_033170 ribosomal protein L6 [Ensembl]. Ribosomal protein L6... 0.27 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR020040 Ribosomal_L6_a/b-dom 11 82
IPR020040 Ribosomal_L6_a/b-dom 90 161
No external refs found!