CCL16923 (sigB, BN171_10011)


Aliases : sigB, BN171_10011

Description : RNA polymerase sigma-B factor (Sigma-37) [Ensembl]. Sigma-70, Sigma-70 region 3, Sigma-70 region 2 [Interproscan].


Gene families : OG_02_0000698 (OrthoFinder) Phylogenetic Tree(s): OG0000698_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL16923
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
CPD22798 sigB, ERS093114_02330 RNA polymerase sigma factor SigB [Ensembl]. Sigma-70... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006305 DNA alkylation IEP Enrichment
BP GO:0006306 DNA methylation IEP Enrichment
BP GO:0007267 cell-cell signaling IEP Enrichment
MF GO:0008818 cobalamin 5'-phosphate synthase activity IEP Enrichment
BP GO:0009372 quorum sensing IEP Enrichment
BP GO:0009405 obsolete pathogenesis IEP Enrichment
BP GO:0009595 detection of biotic stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
BP GO:0023052 signaling IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044728 DNA methylation or demethylation IEP Enrichment
BP GO:0044764 multi-organism cellular process IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
BP GO:0051704 multi-organism process IEP Enrichment
BP GO:0060245 detection of cell density IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 34 103
IPR007630 RNA_pol_sigma70_r4 203 251
IPR007624 RNA_pol_sigma70_r3 113 181
UniProtKB U3WVE1