AGT22561 (N559_0770)

Aliases : N559_0770

Description : LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT22561
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AAL22236	STM3367, yhcS	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AAL22467	STM3607, yhjC	putative LysR family transcriptional regulator...	0.03	OrthoFinder
CRN86190	dmlR_3	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRO10861	dmlR_7	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRO40258	dmlR_13	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRO42652	dmlR_14	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRO43057	dmlR_15	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRO61031	dmlR_17	D-malate degradation protein R [Ensembl]. LysR substrate...	0.06	OrthoFinder
CRP22590	dmlR_24	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRP32263	dmlR_28	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRP37683	dmlR_29	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRP53621	dmlR_30	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRP68785	dmlR_33	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRP78779	dmlR_35	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
KNA55708	VCV51_031016	LysR substrate binding domain-containing protein...	0.04	OrthoFinder
KNA59372	VCV51_031318	LysR substrate binding domain-containing protein...	0.05	OrthoFinder
KNA59855	VCV51_032266	LysR substrate binding domain-containing protein...	0.06	OrthoFinder
KNA59999	VCV51_032411	LysR substrate binding domain-containing protein...	0.07	OrthoFinder
KNA60706	VCV51_032145	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA60960	VCV51_031935	LysR substrate binding domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003725	double-stranded RNA binding	IEP	Enrichment
BP	GO:0006766	vitamin metabolic process	IEP	Enrichment
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	Enrichment
MF	GO:0008939	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity	IEP	Enrichment
BP	GO:0009110	vitamin biosynthetic process	IEP	Enrichment
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	4	63
IPR005119	LysR_subst-bd	90	292

External Links

No external refs found!

AGT22561 (N559_0770)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation