AGT22959 (N559_1193)

Aliases : N559_1193

Description : anaerobic nitric oxide reductase transcription regulator [Ensembl]. GAF domain, Sigma-54 interaction domain, RNA polymerase sigma factor 54 interaction domain [InterProScan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT22959
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AAC74385	pspF, b1303	psp operon transcriptional activator [Ensembl]. Sigma-54...	0.05	OrthoFinder
AAC74405	tyrR, b1323	aromatic amino acid biosynthesis and transport regulon...	0.03	OrthoFinder
AAC75607	glrR, b2554	response regulator regulating glmY sRNA in two-component...	0.05	OrthoFinder
AAL19321	STM0367, prpR	regulator for prp operon (EBP family) [Ensembl]....	0.01	OrthoFinder
AAL19603	STM0652	putative sigma-54 dependent transcriptional regulator...	0.02	OrthoFinder
AAL20600	STM1683, tyrR	transcriptional regulator of aromatic amino acid...	0.04	OrthoFinder
AAL20608	STM1691, pspF	transcription activator [Ensembl]. Sigma-54 interaction...	0.04	OrthoFinder
AAL21719	STM2839, ygaA	putative EBP family regulator [Ensembl]. GAF domain,...	0.05	OrthoFinder
AKI50171	L2625_02335	sigma-54 dependent transcriptional regulator [Ensembl]....	0.03	OrthoFinder
CCL16976	BN171_1030026	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.04	OrthoFinder
CCL18448	BN171_2340008	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CCL19165	BN171_2900020	Transcriptional regulator, sigma-54 dependent [Ensembl]....	0.03	OrthoFinder
CCL19199	BN171_2950001	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CCL19713	BN171_3410005	Putative sigma-54 interacting protein (fragment)...	0.04	OrthoFinder
CRN65608	qseF	Quorum-sensing regulator protein F [Ensembl]. Sigma-54...	0.01	OrthoFinder
CRO96924	No alias	(S)-limonene 6-monooxygenase [Ensembl]. PAS fold,...	0.02	OrthoFinder
KNA55086	VCV51_031847	nitrogen regulation protein NR(I) [Ensembl]. Sigma-54...	0.02	OrthoFinder
KNA58588	VCV51_031119	psp operon transcriptional activator [Ensembl]. Sigma-54...	0.03	OrthoFinder
KNA59396	VCV51_031296	sigma-54 interaction domain-containing protein...	0.03	OrthoFinder
KNA60650	VCV51_032089	sigma-54 interaction domain-containing protein...	0.05	OrthoFinder
KNA60791	VCV51_032053	sigma-54 interaction domain-containing protein...	0.07	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008134	transcription factor binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
MF	GO:0004140	dephospho-CoA kinase activity	IEP	Enrichment
MF	GO:0004826	phenylalanine-tRNA ligase activity	IEP	Enrichment
BP	GO:0015936	coenzyme A metabolic process	IEP	Enrichment
BP	GO:0015937	coenzyme A biosynthetic process	IEP	Enrichment
MF	GO:0031072	heat shock protein binding	IEP	Enrichment
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Enrichment
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Enrichment
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
MF	GO:0048029	monosaccharide binding	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003018	GAF	25	161
IPR002078	Sigma_54_int	187	353

External Links

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AGT22959 (N559_1193)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation