AGT24370 (N559_2694, MarA)

Aliases : N559_2694, MarA

Description : DNA-binding transcriptional activator MarA [Ensembl]. Helix-turn-helix domain, DNA binding HTH domain [InterProScan].

Gene families : OG_02_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT24370
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AAC74604	marA, b1531	multiple antibiotic resistance transcriptional regulator...	0.04	OrthoFinder
AAL19532	STM0581	putative regulatory protein [Ensembl]. Helix-turn-helix...	0.05	OrthoFinder
AAL20438	STM1519, marA	AraC/XylS family transcriptional activator of defense...	0.04	OrthoFinder
AKI49117	L2625_01205	transcriptional regulator, AraC family [Ensembl]. DNA...	0.03	OrthoFinder
CCL17275	BN171_1430002	Transcriptional regulator, AraC family [Ensembl]....	0.03	OrthoFinder
CPC99917	btr, ERS093114_01825	AraC family transcriptional regulator [Ensembl]....	0.04	OrthoFinder
CPD11604	ERS093114_02076	Transcription regulator [Ensembl]. Helix-turn-helix...	0.03	OrthoFinder
KNA60578	VCV51_032249	AraC family Bacterial regulatory helix-turn-helix...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Enrichment
BP	GO:0006099	tricarboxylic acid cycle	IEP	Enrichment
MF	GO:0008924	malate dehydrogenase (quinone) activity	IEP	Enrichment
BP	GO:0015718	monocarboxylic acid transport	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016615	malate dehydrogenase activity	IEP	Enrichment
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016901	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
BP	GO:0042908	xenobiotic transport	IEP	Enrichment
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Enrichment
BP	GO:0042919	benzoate transport	IEP	Enrichment
MF	GO:0042925	benzoate transmembrane transporter activity	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0046942	carboxylic acid transport	IEP	Enrichment
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR018060	HTH_AraC	33	109

External Links

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AGT24370 (N559_2694, MarA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation