AGT24370 (N559_2694, MarA)


Aliases : N559_2694, MarA

Description : DNA-binding transcriptional activator MarA [Ensembl]. Helix-turn-helix domain, DNA binding HTH domain [InterProScan].


Gene families : OG_02_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24370
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC74604 marA, b1531 multiple antibiotic resistance transcriptional regulator... 0.04 OrthoFinder
AAL19532 STM0581 putative regulatory protein [Ensembl]. Helix-turn-helix... 0.05 OrthoFinder
AAL20438 STM1519, marA AraC/XylS family transcriptional activator of defense... 0.04 OrthoFinder
AKI49117 L2625_01205 transcriptional regulator, AraC family [Ensembl]. DNA... 0.03 OrthoFinder
CCL17275 BN171_1430002 Transcriptional regulator, AraC family [Ensembl].... 0.03 OrthoFinder
CPC99917 btr, ERS093114_01825 AraC family transcriptional regulator [Ensembl].... 0.04 OrthoFinder
CPD11604 ERS093114_02076 Transcription regulator [Ensembl]. Helix-turn-helix... 0.03 OrthoFinder
KNA60578 VCV51_032249 AraC family Bacterial regulatory helix-turn-helix... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005342 organic acid transmembrane transporter activity IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
MF GO:0008924 malate dehydrogenase (quinone) activity IEP Enrichment
BP GO:0015718 monocarboxylic acid transport IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042908 xenobiotic transport IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
BP GO:0042919 benzoate transport IEP Enrichment
MF GO:0042925 benzoate transmembrane transporter activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR018060 HTH_AraC 33 109
No external refs found!