AGT24929 (N559_3271)

Aliases : N559_3271

Description : putative LysR-family transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT24929
Cluster	HCCA: Cluster_19

Target	Alias	Description	ECC score	Gene Family Method
AAC74410	pgrR, b1328	murein peptide degradation regulator [Ensembl]. LysR...	0.01	OrthoFinder
AAC74869	dmlR, b1799	transcriptional activator of dmlA [Ensembl]. LysR...	0.03	OrthoFinder
AAC76546	rcdB, b3521	LysR family putative transcriptional regulator...	0.02	OrthoFinder
AGT24266	N559_2588	LysR substrate binding domain protein [Ensembl]. LysR...	0.04	OrthoFinder
AGT24568	N559_2901	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
CRN81682	dmlR_2	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRO10861	dmlR_7	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRO36183	dmlR_11	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRO42652	dmlR_14	D-malate degradation protein R [Ensembl]. LysR substrate...	0.01	OrthoFinder
CRP37683	dmlR_29	D-malate degradation protein R [Ensembl]. LysR substrate...	0.04	OrthoFinder
CRP53621	dmlR_30	D-malate degradation protein R [Ensembl]. LysR substrate...	0.01	OrthoFinder
CRP78779	dmlR_35	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
EDJ90555	CGSHi22421_03258	DNA topoisomerase I [Ensembl]. LysR substrate binding...	0.03	OrthoFinder
KNA59999	VCV51_032411	LysR substrate binding domain-containing protein...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Enrichment
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0005534	galactose binding	IEP	Enrichment
BP	GO:0006012	galactose metabolic process	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008108	UDP-glucose:hexose-1-phosphate uridylyltransferase activity	IEP	Enrichment
BP	GO:0008643	carbohydrate transport	IEP	Enrichment
BP	GO:0009401	phosphoenolpyruvate-dependent sugar phosphotransferase system	IEP	Enrichment
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Enrichment
MF	GO:0015556	C4-dicarboxylate transmembrane transporter activity	IEP	Enrichment
BP	GO:0015740	C4-dicarboxylate transport	IEP	Enrichment
BP	GO:0019216	regulation of lipid metabolic process	IEP	Enrichment
BP	GO:0019217	regulation of fatty acid metabolic process	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Enrichment
MF	GO:0070569	uridylyltransferase activity	IEP	Enrichment
MF	GO:0120227	acyl-CoA binding	IEP	Enrichment
MF	GO:1901567	fatty acid derivative binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	7	66
IPR005119	LysR_subst-bd	91	294

External Links

No external refs found!