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  5. AGT26647

AGT26647 (N559_5070)


Aliases : N559_5070

Description : rhamnose ABC transport system ATP-binding component [Ensembl].


Gene families : OG_02_0000062 (OrthoFinder) Phylogenetic Tree(s): OG0000062_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26647
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AAC74586 lsrA, b1513 autoinducer 2 import ATP-binding protein [Ensembl]. ABC... 0.05 OrthoFinder
AAC74970 araG, b1900 L-arabinose ABC transporter ATPase [Ensembl]. ABC... 0.03 OrthoFinder
AAC75600 yphE, b2547 putative sugar ABC transporter ATPase [Ensembl]. ABC... 0.03 OrthoFinder
AAC76591 xylG, b3567 D-xylose ABC transporter dual domain ATPase [Ensembl].... 0.05 OrthoFinder
AAL22740 STM3882, rbsA D-ribose high-affinity transport protein [Ensembl]. ABC... 0.04 OrthoFinder
AAT48244 ytfR, b4485 putative sugar ABC transporter ATPase [Ensembl]. ABC... 0.04 OrthoFinder
AGT22460 N559_0664 putative ABC transport system ATP-binding component [Ensembl]. 0.04 OrthoFinder
AGT25370 N559_3732 putative ribose ABC transport system ATP-binding... 0.04 OrthoFinder
EDJ91404 CGSHi22421_04853 fused methyl-galactoside transporter subunit of ABC... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008198 ferrous iron binding IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
BP GO:0008645 hexose transmembrane transport IEP Enrichment
MF GO:0008740 L-rhamnose isomerase activity IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015145 monosaccharide transmembrane transporter activity IEP Enrichment
MF GO:0015149 hexose transmembrane transporter activity IEP Enrichment
MF GO:0015153 rhamnose transmembrane transporter activity IEP Enrichment
BP GO:0015749 monosaccharide transmembrane transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0019299 rhamnose metabolic process IEP Enrichment
BP GO:0019634 organic phosphonate metabolic process IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0051119 sugar transmembrane transporter activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 275 427
IPR003439 ABC_transporter-like_ATP-bd 23 174
No external refs found!