AGT26716 (N559_5142)

Aliases : N559_5142

Description : Sigma-70 region 2 [Ensembl].

Gene families : OG_02_0000897 (OrthoFinder) Phylogenetic Tree(s): OG0000897_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AGT26716
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AAC77249 fecI, b4293 RNA polymerase sigma-19 factor, fec operon-specific; ECF... 0.03 OrthoFinder
CRN87257 fecI_2 putative RNA polymerase sigma factor FecI [Ensembl].... 0.03 OrthoFinder
CRN95786 No alias RNA polymerase sigma factor [Ensembl]. Sigma-70 region 2... 0.03 OrthoFinder
CRP26212 fecI_10 putative RNA polymerase sigma factor FecI [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013249 RNA_pol_sigma70_r4_t2 112 164
IPR007627 RNA_pol_sigma70_r2 16 81
No external refs found!