AKI50144 (L2625_02308)

Aliases : L2625_02308

Description : transcriptional regulator, LysR family [Ensembl]. LysR, Transcription regulator HTH [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AKI50144
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC76943 oxyR, b3961 oxidative and nitrosative stress transcriptional... 0.03 OrthoFinder
AKP14096 tfdR, WX61_00007 HTH-type transcriptional regulator TdfR [Ensembl].... 0.03 OrthoFinder
CCG26586 CmbR Cysteine and methionine metabolism regulator CmbR, LysR... 0.05 OrthoFinder
CCL18208 BN171_2160004 Transcriptional regulator, LysR family [Ensembl]. LysR... 0.04 OrthoFinder
CCL19137 BN171_2880004 Transcriptional regulator, LysR family [Ensembl]. LysR... 0.03 OrthoFinder
CRO80200 cynR_3 Cyn operon transcriptional activator [Ensembl]. LysR... 0.02 OrthoFinder
CRP05348 cmpR_4 HTH-type transcriptional activator CmpR [Ensembl]. LysR... 0.02 OrthoFinder
EDJ90156 CGSHi22421_05987 DNA-binding transcriptional regulator OxyR [Ensembl].... 0.03 OrthoFinder
EDJ91352 CGSHi22421_04593 putative HTH-type transcriptional regulator [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006109 regulation of carbohydrate metabolic process IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
CC GO:0009295 nucleoid IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005119 LysR_subst-bd 87 283
IPR000847 Tscrpt_reg_HTH_LysR 4 61
No external refs found!