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Aliases : hfq, BN171_2170017
Description : Hfq-like RNA chaperone [Ensembl]. Hfq protein [Interproscan].
Gene families : OG_02_0001065 (OrthoFinder) Phylogenetic Tree(s): OG0001065_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: CCL18230 | |
| Cluster | HCCA: Cluster_6 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AAC77129 | hfq, b4172 | global sRNA chaperone; HF-I, host factor for RNA phage Q... | 0.03 | OrthoFinder | |
| AGT26316 | N559_4725 | RNA-binding protein Hfq [Ensembl]. | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002097 | tRNA wobble base modification | IEP | Enrichment |
| BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Enrichment |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Enrichment |
| BP | GO:0006382 | adenosine to inosine editing | IEP | Enrichment |
| BP | GO:0006400 | tRNA modification | IEP | Enrichment |
| MF | GO:0008320 | protein transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015450 | P-P-bond-hydrolysis-driven protein transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0016553 | base conversion or substitution editing | IEP | Enrichment |
| MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | Enrichment |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0022884 | macromolecule transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0051920 | peroxiredoxin activity | IEP | Enrichment |
| MF | GO:0140110 | transcription regulator activity | IEP | Enrichment |
| MF | GO:0140318 | protein transporter activity | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005001 | Hfq | 8 | 71 |
| UniProtKB | U3WWW6 |