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  5. CCL18572

CCL18572 (csdA, BN171_2440013)


Aliases : csdA, BN171_2440013

Description : ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box helicase, DbpA RNA binding domain, Helicase conserved C-terminal domain [Interproscan].


Gene families : OG_02_0000033 (OrthoFinder) Phylogenetic Tree(s): OG0000033_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCL18572
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AKP15465 rhlE_2, WX61_01419 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.02 OrthoFinder
CRP17660 rhlE_3 ATP-dependent RNA helicase RhlE [Ensembl]. DEAD/DEAH box... 0.03 OrthoFinder
EDJ91675 CGSHi22421_07968 ATP-dependent RNA helicase [Ensembl]. DEAD/DEAH box... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004140 dephospho-CoA kinase activity IEP Enrichment
BP GO:0006011 UDP-glucose metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006305 DNA alkylation IEP Enrichment
BP GO:0006306 DNA methylation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007267 cell-cell signaling IEP Enrichment
BP GO:0008616 queuosine biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0009119 ribonucleoside metabolic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
BP GO:0009225 nucleotide-sugar metabolic process IEP Enrichment
BP GO:0009372 quorum sensing IEP Enrichment
BP GO:0009405 obsolete pathogenesis IEP Enrichment
BP GO:0009595 detection of biotic stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
BP GO:0023052 signaling IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044728 DNA methylation or demethylation IEP Enrichment
BP GO:0044764 multi-organism cellular process IEP Enrichment
BP GO:0046116 queuosine metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
BP GO:0051704 multi-organism process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
BP GO:0060245 detection of cell density IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 235 340
IPR005580 DbpA/CsdA_RNA-bd_dom 423 493
IPR011545 DEAD/DEAH_box_helicase_dom 28 191
UniProtKB U3WX32