AAL19139 (STM0175, stiC)

Aliases : STM0175, stiC

Description : putative fimbrial usher [Ensembl]. PapC N-terminal domain, PapC C-terminal domain, Outer membrane usher protein [Interproscan].

Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL19139
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AAC73634	sfmD, b0532	putative outer membrane export usher protein [Ensembl]....	0.08	OrthoFinder
AAC74026	elfC, b0940	putative outer membrane fimbrial subunit export usher...	0.08	OrthoFinder
AAC75170	yehB, b2109	putative outer membrane protein [Ensembl]. PapC...	0.08	OrthoFinder
AAL18987	STM0023, bcfC	fimbrial usher [Ensembl]. PapC N-terminal domain, PapC...	0.04	OrthoFinder
AGT26343	N559_4752	putative fimbrial biogenesis outer membrane usher...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009297	pilus assembly	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015288	porin activity	None	Extended
MF	GO:0015473	fimbrial usher porin activity	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022829	wide pore channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030031	cell projection assembly	None	Extended
BP	GO:0043711	pilus organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003911	DNA ligase (NAD+) activity	IEP	Enrichment
MF	GO:0004347	glucose-6-phosphate isomerase activity	IEP	Enrichment
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	Enrichment
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	Enrichment
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	Enrichment
BP	GO:0006814	sodium ion transport	IEP	Enrichment
BP	GO:0007155	cell adhesion	IEP	Enrichment
BP	GO:0008643	carbohydrate transport	IEP	Enrichment
MF	GO:0008671	2-dehydro-3-deoxygalactonokinase activity	IEP	Enrichment
MF	GO:0008948	oxaloacetate decarboxylase activity	IEP	Enrichment
BP	GO:0009112	nucleobase metabolic process	IEP	Enrichment
CC	GO:0009289	pilus	IEP	Enrichment
BP	GO:0009401	phosphoenolpyruvate-dependent sugar phosphotransferase system	IEP	Enrichment
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0016052	carbohydrate catabolic process	IEP	Enrichment
MF	GO:0016829	lyase activity	IEP	Enrichment
MF	GO:0016830	carbon-carbon lyase activity	IEP	Enrichment
MF	GO:0016831	carboxy-lyase activity	IEP	Enrichment
BP	GO:0019520	aldonic acid metabolic process	IEP	Enrichment
BP	GO:0019583	galactonate metabolic process	IEP	Enrichment
BP	GO:0019584	galactonate catabolic process	IEP	Enrichment
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	Enrichment
BP	GO:0022610	biological adhesion	IEP	Enrichment
BP	GO:0030001	metal ion transport	IEP	Enrichment
CC	GO:0030288	outer membrane-bounded periplasmic space	IEP	Enrichment
BP	GO:0034192	D-galactonate metabolic process	IEP	Enrichment
BP	GO:0034194	D-galactonate catabolic process	IEP	Enrichment
BP	GO:0035725	sodium ion transmembrane transport	IEP	Enrichment
BP	GO:0036376	sodium ion export across plasma membrane	IEP	Enrichment
CC	GO:0042995	cell projection	IEP	Enrichment
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Enrichment
BP	GO:0045229	external encapsulating structure organization	IEP	Enrichment
BP	GO:0046112	nucleobase biosynthetic process	IEP	Enrichment
BP	GO:0046176	aldonic acid catabolic process	IEP	Enrichment
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Enrichment
BP	GO:0070839	metal ion export	IEP	Enrichment
BP	GO:0071554	cell wall organization or biogenesis	IEP	Enrichment
BP	GO:0071555	cell wall organization	IEP	Enrichment
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0140115	export across plasma membrane	IEP	Enrichment
BP	GO:1901575	organic substance catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR025949	PapC-like_C	769	831
IPR025885	PapC_N	33	181
IPR000015	Fimb_usher	198	759

External Links

No external refs found!

AAL19139 (STM0175, stiC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation