AAL20543 (STM1625, ydcI)


Aliases : STM1625, ydcI

Description : putative LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].


Gene families : OG_02_0002303 (OrthoFinder) Phylogenetic Tree(s): OG0002303_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL20543
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AAC74504 ydcI, b1422 putative DNA-binding transcriptional regulator... 0.19 OrthoFinder
AGT24038 N559_2337 putative transcriptional regulator (LysR familiy)... 0.19 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004129 cytochrome-c oxidase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006527 arginine catabolic process IEP Enrichment
BP GO:0007154 cell communication IEP Enrichment
MF GO:0008028 monocarboxylic acid transmembrane transporter activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0008791 arginine N-succinyltransferase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009065 glutamine family amino acid catabolic process IEP Enrichment
BP GO:0009267 cellular response to starvation IEP Enrichment
BP GO:0009991 response to extracellular stimulus IEP Enrichment
MF GO:0015129 lactate transmembrane transporter activity IEP Enrichment
BP GO:0015727 lactate transport IEP Enrichment
BP GO:0015850 organic hydroxy compound transport IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016748 succinyltransferase activity IEP Enrichment
MF GO:0016749 N-succinyltransferase activity IEP Enrichment
BP GO:0031667 response to nutrient levels IEP Enrichment
BP GO:0031668 cellular response to extracellular stimulus IEP Enrichment
BP GO:0031669 cellular response to nutrient levels IEP Enrichment
BP GO:0042594 response to starvation IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0050498 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071496 cellular response to external stimulus IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 13 72
IPR005119 LysR_subst-bd 100 305
No external refs found!