Aliases : STM1683, tyrR
Description : transcriptional regulator of aromatic amino acid biosynthesis genes (aroF, aroG, tyrA) and aromatic amino acid transport [Ensembl]. Helix-turn-helix domain, Sigma-54 interaction domain [Interproscan].
Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AAL20600 | |
Cluster | HCCA: Cluster_41 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC74405 | tyrR, b1323 | aromatic amino acid biosynthesis and transport regulon... | 0.08 | OrthoFinder | |
AAC75773 | fhlA, b2731 | formate hydrogenlyase transcriptional activator... | 0.04 | OrthoFinder | |
AAC75907 | ygeV, b2869 | putative sigma-54-interacting transcriptional activator... | 0.03 | OrthoFinder | |
AGT22935 | N559_1166, FhlA | formate hydrogenlyase transcriptional activator FhlA... | 0.04 | OrthoFinder | |
AGT22959 | N559_1193 | anaerobic nitric oxide reductase transcription regulator... | 0.04 | OrthoFinder | |
CRO39560 | dctD_1 | C4-dicarboxylate transport transcriptional regulatory... | 0.02 | OrthoFinder | |
CRP62097 | rocR | Arginine utilization regulatory protein RocR [Ensembl].... | 0.03 | OrthoFinder | |
KNA50402 | VCV51_031428 | sigma-54 interaction domain-containing protein... | 0.04 | OrthoFinder | |
KNA55256 | VCV51_033069 | sigma-54 interaction domain-containing protein... | 0.03 | OrthoFinder | |
KNA58588 | VCV51_031119 | psp operon transcriptional activator [Ensembl]. Sigma-54... | 0.04 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | Interproscan |
MF | GO:0008134 | transcription factor binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Enrichment |
BP | GO:0001514 | selenocysteine incorporation | IEP | Enrichment |
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Enrichment |
MF | GO:0003725 | double-stranded RNA binding | IEP | Enrichment |
MF | GO:0003746 | translation elongation factor activity | IEP | Enrichment |
MF | GO:0004177 | aminopeptidase activity | IEP | Enrichment |
MF | GO:0004418 | hydroxymethylbilane synthase activity | IEP | Enrichment |
MF | GO:0005539 | glycosaminoglycan binding | IEP | Enrichment |
BP | GO:0006066 | alcohol metabolic process | IEP | Enrichment |
BP | GO:0006414 | translational elongation | IEP | Enrichment |
BP | GO:0006417 | regulation of translation | IEP | Enrichment |
BP | GO:0006451 | translational readthrough | IEP | Enrichment |
MF | GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity | IEP | Enrichment |
BP | GO:0010565 | regulation of cellular ketone metabolic process | IEP | Enrichment |
BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Enrichment |
BP | GO:0016311 | dephosphorylation | IEP | Enrichment |
BP | GO:0019216 | regulation of lipid metabolic process | IEP | Enrichment |
BP | GO:0019217 | regulation of fatty acid metabolic process | IEP | Enrichment |
BP | GO:0019751 | polyol metabolic process | IEP | Enrichment |
MF | GO:0030145 | manganese ion binding | IEP | Enrichment |
BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Enrichment |
BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Enrichment |
MF | GO:0042834 | peptidoglycan binding | IEP | Enrichment |
MF | GO:0043565 | sequence-specific DNA binding | IEP | Enrichment |
BP | GO:0043647 | inositol phosphate metabolic process | IEP | Enrichment |
BP | GO:0046164 | alcohol catabolic process | IEP | Enrichment |
BP | GO:0046174 | polyol catabolic process | IEP | Enrichment |
BP | GO:0046838 | phosphorylated carbohydrate dephosphorylation | IEP | Enrichment |
BP | GO:0046855 | inositol phosphate dephosphorylation | IEP | Enrichment |
BP | GO:0051246 | regulation of protein metabolic process | IEP | Enrichment |
BP | GO:0062012 | regulation of small molecule metabolic process | IEP | Enrichment |
BP | GO:0071545 | inositol phosphate catabolic process | IEP | Enrichment |
MF | GO:0120227 | acyl-CoA binding | IEP | Enrichment |
MF | GO:0140110 | transcription regulator activity | IEP | Enrichment |
MF | GO:1901567 | fatty acid derivative binding | IEP | Enrichment |
BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Enrichment |
BP | GO:1901616 | organic hydroxy compound catabolic process | IEP | Enrichment |
MF | GO:1901681 | sulfur compound binding | IEP | Enrichment |
No external refs found! |