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AAL20608 (STM1691, pspF)


Aliases : STM1691, pspF

Description : transcription activator [Ensembl]. Sigma-54 interaction domain [Interproscan].


Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL20608
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC76978 zraR, b4004 fused DNA-binding response regulator in two-component... 0.04 OrthoFinder
AGT22853 N559_1079 sigma-54 dependent transcriptional regulator [Ensembl].... 0.05 OrthoFinder
AGT22959 N559_1193 anaerobic nitric oxide reductase transcription regulator... 0.04 OrthoFinder
AGT26495 N559_4911 fused DNA-binding response regulator [Ensembl]. Response... 0.04 OrthoFinder
CRO45386 zraR_4 Transcriptional regulatory protein ZraR [Ensembl].... 0.03 OrthoFinder
CRO96924 No alias (S)-limonene 6-monooxygenase [Ensembl]. PAS fold,... 0.03 OrthoFinder
KNA60791 VCV51_032053 sigma-54 interaction domain-containing protein... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
InterPro domains Description Start Stop
IPR002078 Sigma_54_int 9 170
No external refs found!