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AAL20752 (STM1837, cspC)


Aliases : STM1837, cspC

Description : cold shock protein [Ensembl]. 'Cold-shock' DNA-binding domain [Interproscan].


Gene families : OG_02_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL20752
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AAC73724 cspE, b0623 constitutive cold shock family transcription... 0.13 OrthoFinder
AAC74893 cspC, b1823 stress protein, member of the CspA-family [Ensembl].... 0.04 OrthoFinder
AKI49873 cspD, L2625_02021 cold-shock domain family protein [Ensembl]. Cold-shock... 0.04 OrthoFinder
AKP15786 cspD, WX61_01751 Cold shock-like protein CspD [Ensembl]. 'Cold-shock'... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0005342 organic acid transmembrane transporter activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
MF GO:0015171 amino acid transmembrane transporter activity IEP Enrichment
MF GO:0015179 L-amino acid transmembrane transporter activity IEP Enrichment
MF GO:0015562 efflux transmembrane transporter activity IEP Enrichment
MF GO:0034639 L-amino acid efflux transmembrane transporter activity IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 5 68
No external refs found!