AAL21262 (STM2361)

Aliases : STM2361

Description : putative regulatory protein [Ensembl]. PAS fold, Sigma-54 interaction domain, Bacterial regulatory protein [Interproscan].

Gene families : OG_02_0000008 (OrthoFinder) Phylogenetic Tree(s): OG0000008_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL21262
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AAC74385	pspF, b1303	psp operon transcriptional activator [Ensembl]. Sigma-54...	0.05	OrthoFinder
AAC74405	tyrR, b1323	aromatic amino acid biosynthesis and transport regulon...	0.03	OrthoFinder
AAC75280	atoC, b2220	fused response regulator of ato operon, in two-component...	0.01	OrthoFinder
AAC75907	ygeV, b2869	putative sigma-54-interacting transcriptional activator...	0.06	OrthoFinder
AGT22935	N559_1166, FhlA	formate hydrogenlyase transcriptional activator FhlA...	0.04	OrthoFinder
AKP15503	zraR, WX61_01457	Transcriptional regulatory protein ZraR [Ensembl]....	0.03	OrthoFinder
CCL19199	BN171_2950001	Transcriptional regulator, sigma-54-dependent [Ensembl]....	0.03	OrthoFinder
CRO39560	dctD_1	C4-dicarboxylate transport transcriptional regulatory...	0.02	OrthoFinder
CRP62097	rocR	Arginine utilization regulatory protein RocR [Ensembl]....	0.03	OrthoFinder
EDJ91589	CGSHi22421_07457	transcriptional regulatory protein [Ensembl]....	0.02	OrthoFinder
KNA60650	VCV51_032089	sigma-54 interaction domain-containing protein...	0.04	OrthoFinder
KNA60791	VCV51_032053	sigma-54 interaction domain-containing protein...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
MF	GO:0008134	transcription factor binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
BP	GO:0001514	selenocysteine incorporation	IEP	Enrichment
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
MF	GO:0003746	translation elongation factor activity	IEP	Enrichment
MF	GO:0005534	galactose binding	IEP	Enrichment
BP	GO:0006417	regulation of translation	IEP	Enrichment
BP	GO:0006451	translational readthrough	IEP	Enrichment
BP	GO:0009061	anaerobic respiration	IEP	Enrichment
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Enrichment
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	Enrichment
MF	GO:0016662	oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor	IEP	Enrichment
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Enrichment
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
MF	GO:0042279	nitrite reductase (cytochrome, ammonia-forming) activity	IEP	Enrichment
MF	GO:0043546	molybdopterin cofactor binding	IEP	Enrichment
BP	GO:0051246	regulation of protein metabolic process	IEP	Enrichment
MF	GO:0098809	nitrite reductase activity	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002197	HTH_Fis	428	466
IPR013656	PAS_4	19	127
IPR002078	Sigma_54_int	151	314

External Links

No external refs found!

AAL21262 (STM2361)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation