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AAL22085 (STM3211, rpoD)


Aliases : STM3211, rpoD

Description : sigma D factor of RNA polymerase [Ensembl]. Sigma-70 factor, Sigma-70 region 2, Sigma-70 region 3 [Interproscan].


Gene families : OG_02_0000197 (OrthoFinder) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL22085
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AGT22495 N559_0700, RpoD RNA polymerase sigma factor RpoD [Ensembl].... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR007630 RNA_pol_sigma70_r4 594 647
IPR009042 RNA_pol_sigma70_r1_2 143 173
IPR007127 RNA_pol_sigma_70_r1_1 49 126
IPR007631 RNA_pol_sigma_70_non-ess 184 395
IPR007624 RNA_pol_sigma70_r3 505 580
IPR007627 RNA_pol_sigma70_r2 426 495
No external refs found!