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  5. AAL22279

AAL22279 (STM3416, rpsD)


Aliases : STM3416, rpsD

Description : 30S ribosomal subunit protein S4 [Ensembl]. S4 domain, Ribosomal protein S4/S9 N-terminal domain [Interproscan].


Gene families : OG_02_0000478 (OrthoFinder) Phylogenetic Tree(s): OG0000478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL22279
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AAC76321 rpsD, b3296 30S ribosomal subunit protein S4 [Ensembl]. S4 domain,... 0.38 OrthoFinder
AAK98882 spr0078, rpsD 30S Ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.13 OrthoFinder
ADK87239 rpsD, MPNE_0519 ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.02 OrthoFinder
AEA95027 rpsD, OG1RF_12340 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.15 OrthoFinder
AHY40767 rpsD, CJ8421_07975 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.32 OrthoFinder
AKI49593 rpsD, L2625_01702 ribosomal protein S4 [Ensembl]. RNA-binding S4 domain,... 0.09 OrthoFinder
AKP15145 rpsD, WX61_01091 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.17 OrthoFinder
CBI65742 rpsD, HPB8_185 small subunit ribosomal protein S4 [Ensembl]. S4 domain,... 0.21 OrthoFinder
CCG27433 No alias SSU ribosomal protein S4p (S9e) [Ensembl]. S4 domain,... 0.18 OrthoFinder
CCL20590 rpsD, BN171_70030 30S ribosomal protein S4 [Ensembl]. Ribosomal protein... 0.25 OrthoFinder
CCP46280 rpsD, Rv3458c 30S ribosomal protein S4 RpsD [Ensembl]. S4 domain,... 0.18 OrthoFinder
CPD27729 rpsD, ERS093114_02451 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.28 OrthoFinder
CRO74463 rpsD 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.26 OrthoFinder
EDJ91380 rpsD, CGSHi22421_04733 30S ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.38 OrthoFinder
KNA54996 VCV51_033179 ribosomal protein S4 [Ensembl]. S4 domain, Ribosomal... 0.25 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 3 95
IPR002942 S4_RNA-bd 97 143
No external refs found!