AAL22311 (STM3448, rpsL)

Aliases : STM3448, rpsL

Description : 30S ribosomal subunit protein S12 [Ensembl]. Ribosomal protein S12/S23 [Interproscan].

Gene families : OG_02_0000684 (OrthoFinder) Phylogenetic Tree(s): OG0000684_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL22311
Cluster	HCCA: Cluster_23

Target	Alias	Description	ECC score	Gene Family Method
AAC76367	rpsL, b3342	30S ribosomal subunit protein S12 [Ensembl]. Ribosomal...	0.51	OrthoFinder
AAK99052	spr0248, rpsL	30S Ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.29	OrthoFinder
ADK87065	rpsL, MPNE_0257	ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.09	OrthoFinder
AEA92831	rpsL, OG1RF_10144	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.3	OrthoFinder
AKI50591	rpsL, L2625_02801	ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.14	OrthoFinder
AKP15118	rpsL, WX61_01064	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.12	OrthoFinder
CCG26288	No alias	SSU ribosomal protein S12p (S23e) [Ensembl]. Ribosomal...	0.15	OrthoFinder
CCL20678	rpsL, BN171_90004	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.29	OrthoFinder
CCP43425	rpsL, Rv0682	30S ribosomal protein S12 RpsL [Ensembl]. Ribosomal...	0.17	OrthoFinder
CPC57151	rpsL, ERS093114_00833	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.32	OrthoFinder
CRO73605	rpsL	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.19	OrthoFinder
EDJ90052	CGSHi22421_05925	tRNA uridine 5-carboxymethylaminomethyl modification...	0.3	OrthoFinder
KNA49090	VCV51_033819	ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.28	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
MF	GO:0004312	fatty acid synthase activity	IEP	Enrichment
MF	GO:0004315	3-oxoacyl-[acyl-carrier-protein] synthase activity	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
BP	GO:0009116	nucleoside metabolic process	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment
MF	GO:0097747	RNA polymerase activity	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
BP	GO:1901657	glycosyl compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	12	123

External Links

No external refs found!

AAL22311 (STM3448, rpsL)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation