AAL22934 (STM4094, cytR)

Aliases : STM4094, cytR

Description : GalR/LacI family transcriptional repressor [Ensembl]. Bacterial regulatory proteins, Periplasmic binding protein-like domain [Interproscan].

Gene families : OG_02_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL22934
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method
AAC75876	galR, b2837	galactose-inducible d-galactose regulon transcriptional...	0.03	OrthoFinder
AAC76776	rbsR, b3753	transcriptional repressor of ribose metabolism...	0.03	OrthoFinder
AAC76916	cytR, b3934	Anti-activator for CytR-CRP nucleoside utilization...	0.04	OrthoFinder
AGT22772	N559_0986	putative transcriptional regulator [Ensembl]....	0.05	OrthoFinder
AGT22777	N559_0991, GalR	DNA-binding transcriptional regulator GalR [Ensembl]....	0.06	OrthoFinder
AGT22953	N559_1185	ascBF operon repressor [Ensembl]. Periplasmic binding...	0.03	OrthoFinder
AGT25335	N559_3695	putative periplasmic binding protein/LacI...	0.03	OrthoFinder
AGT26627	N559_5050, CytR	DNA-binding transcriptional regulator CytR [Ensembl]....	0.06	OrthoFinder
AGT26654	N559_5077	repressor of galETK operon [Ensembl]. Periplasmic...	0.03	OrthoFinder
AGT26694	N559_5120	ribose operon repressor [Ensembl]. Periplasmic binding...	0.06	OrthoFinder
AKI48007	L2625_00032	transcriptional regulator, LacI family [Ensembl]....	0.02	OrthoFinder
AKI49597	ccpA, L2625_01707	catabolite control protein A [Ensembl]. LacI-type HTH...	0.02	OrthoFinder
CCG26537	MalR	Maltose operon transcriptional repressor MalR,LacI...	0.04	OrthoFinder
CCG27166	No alias	Catabolite control protein A [Ensembl]. Bacterial...	0.04	OrthoFinder
CPD28325	ccpA, ERS093114_02469	catabolite control protein A [Ensembl]. Bacterial...	0.03	OrthoFinder
EDJ91402	CGSHi22421_04843	HTH-type transcriptional regulator GalR [Ensembl]....	0.03	OrthoFinder
EDJ91486	CGSHi22421_06942	hypothetical protein [Ensembl]. Bacterial regulatory...	0.03	OrthoFinder
KNA60659	VCV51_032098	lacI family Bacterial regulatory protein [Ensembl]....	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004340	glucokinase activity	IEP	Enrichment
MF	GO:0004396	hexokinase activity	IEP	Enrichment
MF	GO:0004620	phospholipase activity	IEP	Enrichment
MF	GO:0005536	glucose binding	IEP	Enrichment
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0008152	metabolic process	IEP	Enrichment
BP	GO:0009061	anaerobic respiration	IEP	Enrichment
BP	GO:0009116	nucleoside metabolic process	IEP	Enrichment
BP	GO:0009267	cellular response to starvation	IEP	Enrichment
MF	GO:0016298	lipase activity	IEP	Enrichment
MF	GO:0016657	oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016866	intramolecular transferase activity	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
MF	GO:0019200	carbohydrate kinase activity	IEP	Enrichment
BP	GO:0019637	organophosphate metabolic process	IEP	Enrichment
BP	GO:0031667	response to nutrient levels	IEP	Enrichment
BP	GO:0031669	cellular response to nutrient levels	IEP	Enrichment
MF	GO:0033739	preQ1 synthase activity	IEP	Enrichment
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Enrichment
BP	GO:0042594	response to starvation	IEP	Enrichment
BP	GO:0044238	primary metabolic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	Enrichment
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901657	glycosyl compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000843	HTH_LacI	1	45

External Links

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AAL22934 (STM4094, cytR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation